View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_152 (Length: 285)
Name: NF8912A_low_152
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_152 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 2500 - 2239
Alignment:
| Q |
5 |
cagaatcagagatgaccaaataataataacaattattaaaatacacaataaaaccctannnnnnncttcattgttatgaaataataatacacaagaaagt |
104 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
2500 |
cagaatcagaaatgaccaaataataataacaattattaaaatacacaataaaaccctatttttttcttcattgttatgaaataataatacacaagaaaat |
2401 |
T |
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| Q |
105 |
gcatcattataaatagaaacaaagaaaaatggacctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2400 |
gcatcattataaatagaaacaaagaaaaatggacctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgta |
2301 |
T |
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| Q |
205 |
aagcaggtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacggaagaaat |
266 |
Q |
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| T |
2300 |
aagcaggtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacggtagaaat |
2239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 3451719 - 3451458
Alignment:
| Q |
5 |
cagaatcagagatgaccaaataataataacaattattaaaatacacaataaaaccctannnnnnncttcattgttatgaaataataatacacaagaaagt |
104 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
3451719 |
cagaatcagaaatgaccaaataataataacaattattaaaatacacaataaaaccctatttttttcttcattgttatgaaataataatacacaagaaaat |
3451620 |
T |
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| Q |
105 |
gcatcattataaatagaaacaaagaaaaatggacctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451619 |
gcatcattataaatagaaacaaagaaaaatggacctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgta |
3451520 |
T |
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| Q |
205 |
aagcaggtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacggaagaaat |
266 |
Q |
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| T |
3451519 |
aagcaggtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacggtagaaat |
3451458 |
T |
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