View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_153 (Length: 284)

Name: NF8912A_low_153
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_153
NF8912A_low_153
[»] chr4 (14 HSPs)
chr4 (10-259)||(29802412-29802661)
chr4 (34-122)||(7147702-7147789)
chr4 (25-122)||(41603242-41603339)
chr4 (35-95)||(34544141-34544201)
chr4 (34-69)||(45484780-45484815)
chr4 (34-67)||(3340870-3340903)
chr4 (23-52)||(37530083-37530112)
chr4 (34-67)||(49302969-49303002)
chr4 (34-67)||(49880223-49880256)
chr4 (34-67)||(50630815-50630848)
chr4 (34-67)||(54936259-54936292)
chr4 (35-67)||(18932810-18932842)
chr4 (98-138)||(53660658-53660698)
chr4 (35-67)||(54017656-54017688)
[»] chr8 (6 HSPs)
chr8 (10-122)||(40991761-40991873)
chr8 (34-74)||(11442909-11442949)
chr8 (28-122)||(30737674-30737762)
chr8 (34-64)||(40518137-40518167)
chr8 (34-67)||(40518645-40518678)
chr8 (35-67)||(70337-70369)
[»] chr7 (7 HSPs)
chr7 (36-138)||(28855797-28855899)
chr7 (34-67)||(1085678-1085711)
chr7 (34-67)||(7517643-7517676)
chr7 (34-67)||(22566724-22566757)
chr7 (82-123)||(46411920-46411961)
chr7 (35-67)||(16569259-16569291)
chr7 (35-67)||(16596371-16596403)
[»] chr2 (9 HSPs)
chr2 (10-122)||(2336632-2336744)
chr2 (34-95)||(29874085-29874146)
chr2 (34-122)||(31385745-31385833)
chr2 (82-123)||(13154491-13154532)
chr2 (34-67)||(14745729-14745762)
chr2 (34-67)||(15880326-15880359)
chr2 (34-67)||(36178667-36178700)
chr2 (34-67)||(38796682-38796715)
chr2 (34-66)||(14745356-14745388)
[»] chr1 (5 HSPs)
chr1 (76-138)||(17996071-17996133)
chr1 (34-67)||(17294640-17294673)
chr1 (23-52)||(28963586-28963615)
chr1 (34-67)||(44290520-44290553)
chr1 (34-67)||(44290887-44290920)
[»] chr6 (5 HSPs)
chr6 (34-138)||(5034883-5034987)
chr6 (34-95)||(12092544-12092605)
chr6 (34-67)||(2377817-2377850)
chr6 (34-67)||(10074053-10074086)
chr6 (35-67)||(3415521-3415553)
[»] chr5 (10 HSPs)
chr5 (28-79)||(32445936-32445987)
chr5 (34-67)||(18603182-18603215)
chr5 (34-67)||(25327998-25328031)
chr5 (34-67)||(26074675-26074708)
chr5 (34-67)||(26075224-26075257)
chr5 (26-95)||(31509658-31509727)
chr5 (26-95)||(31509766-31509835)
chr5 (34-67)||(32487456-32487489)
chr5 (34-67)||(41170697-41170730)
chr5 (31-67)||(11417036-11417072)
[»] chr3 (7 HSPs)
chr3 (26-68)||(50329386-50329428)
chr3 (84-127)||(31264759-31264802)
chr3 (34-67)||(22303721-22303754)
chr3 (34-95)||(25317193-25317254)
chr3 (34-67)||(32589766-32589799)
chr3 (34-67)||(41359827-41359860)
chr3 (82-122)||(33153565-33153604)
[»] scaffold0391 (1 HSPs)
scaffold0391 (35-69)||(1754-1788)
[»] scaffold0702 (1 HSPs)
scaffold0702 (34-67)||(576-609)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 29802661 - 29802412
Alignment:
Q  10 tgagatggacatcatatcttaacacaaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccactttatcaagcaatgtga 109  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29802661 tgagttggacaccatatcttaacacaaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtgctcaacctccactttatcaagcaatgtga 29802562  T
Q  110 gacttctaactcatctcacacttgccacagcgacaacatgcgacacaagctacttttatcattttgataagatattaagttgcaacaggatagctaaaag 209  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29802561 gacttctaactcatctcacacttgccacagcaacaacatgcgacacaagctacttttatcattttgataagatattaagttgcaacaggatagctaaaag 29802462  T
Q  210 atgaaggtggcatatggcatctggcaccaagtgatttcttgaaaaagcct 259  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29802461 ctgaaggtggcatatggcatctggcaccaagtgatttcttgaaaaagcct 29802412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 7147702 - 7147789
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccactttatcaagcaatgtgagacttctaactca 122  Q
    |||||||||||| ||||||||||| ||||||||||| ||   ||||  ||||||||||||||   ||||||||||||||||||||||||    
T  7147702 caaaaccttaagacattgggtttacgggtcctctcacttaa-aagtgttcaacctccacttttctaagcaatgtgagacttctaactca 7147789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 41603242 - 41603339
Alignment:
Q  25 atcttaacacaaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccactttatcaagcaatgtgagacttctaactca 122  Q
    ||||| || |||||||||||| || |  ||||||||||| ||||| || | |||| |||||||||||||||  ||||||| ||| |||||||||||||    
T  41603242 atctttacccaaaaccttaagacactatgtttatgggtcttctcacttataaagtgctcaacctccacttttccaagcaacgtgggacttctaactca 41603339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 34544201 - 34544141
Alignment:
Q  35 aaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccacttt 95  Q
    |||||||||||||| || ||||||||||||||||| || | ||||  ||||||||||||||    
T  34544201 aaaaccttaaggcaatgagtttatgggtcctctcatttataaagtgatcaacctccacttt 34544141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 45484815 - 45484780
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctctca 69  Q
    ||||||||||||||||||||||||||||| ||||||    
T  45484815 caaaaccttaaggcattgggtttatgggttctctca 45484780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 3340903 - 3340870
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  3340903 caaaaccttaaggcagtgggtttatgggtcctct 3340870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 37530083 - 37530112
Alignment:
Q  23 atatcttaacacaaaaccttaaggcattgg 52  Q
    ||||||||||||||||||||||||||||||    
T  37530083 atatcttaacacaaaaccttaaggcattgg 37530112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 49303002 - 49302969
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  49303002 caaaaccttaaggcaatgggtttatgggtcctct 49302969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 49880256 - 49880223
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  49880256 caaaaccttaaggcagtgggtttatgggtcctct 49880223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 50630815 - 50630848
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  50630815 caaaaccttaaggcaatgggtttatgggtcctct 50630848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 54936292 - 54936259
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  54936292 caaaaccttaaggcaatgggtttatgggtcctct 54936259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 18932810 - 18932842
Alignment:
Q  35 aaaaccttaaggcattgggtttatgggtcctct 67  Q
    |||||||||||||| ||||||||||||||||||    
T  18932810 aaaaccttaaggcaatgggtttatgggtcctct 18932842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 53660658 - 53660698
Alignment:
Q  98 caagcaatgtgagacttctaactcatctcacacttgccaca 138  Q
    |||||||||||| | ||||||||||||||| ||||||||||    
T  53660658 caagcaatgtgaaatttctaactcatctcatacttgccaca 53660698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 54017656 - 54017688
Alignment:
Q  35 aaaaccttaaggcattgggtttatgggtcctct 67  Q
    |||||||||||||| ||||||||||||||||||    
T  54017656 aaaaccttaaggcaatgggtttatgggtcctct 54017688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 40991873 - 40991761
Alignment:
Q  10 tgagatggacatcatatcttaacacaaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccactttatcaagcaatgtga 109  Q
    |||| |||||| || |||||||| ||||||||| |||||||||||||||||||||||||| || | ||||  ||||||||||||||   ||||||||||     
T  40991873 tgagttggacaccacatcttaacccaaaaccttgaggcattgggtttatgggtcctctcacttatgaagtgttcaacctccacttttctaagcaatgtgg 40991774  T
Q  110 gacttctaactca 122  Q
    |||||||||||||    
T  40991773 gacttctaactca 40991761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 11442949 - 11442909
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctctcagttgt 74  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  11442949 caaaaccttaaggcattgagtttatgggtcctctcacttgt 11442909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 30737674 - 30737762
Alignment:
Q  28 ttaacacaaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccactttatcaagcaatgtgagacttctaactca 122  Q
    ||||| |||||||||| | ||||||||||||||||||||||| ||      | ||||||||||||||| | |||||||||| ||||||| |||||    
T  30737674 ttaacccaaaaccttatgacattgggtttatgggtcctctcattt-----ttgctcaacctccactttct-aagcaatgtgggacttctgactca 30737762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 40518167 - 40518137
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcc 64  Q
    |||||||||||||||||||||||||||||||    
T  40518167 caaaaccttaaggcattgggtttatgggtcc 40518137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 40518678 - 40518645
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    |||||||||||| |||||||||||||||||||||    
T  40518678 caaaaccttaagtcattgggtttatgggtcctct 40518645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 70337 - 70369
Alignment:
Q  35 aaaaccttaaggcattgggtttatgggtcctct 67  Q
    |||||||||||||| ||||||||||||||||||    
T  70337 aaaaccttaaggcagtgggtttatgggtcctct 70369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 28855797 - 28855899
Alignment:
Q  36 aaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccactttatcaagcaatgtgagacttctaactcatctcacacttgcc 135  Q
    ||||||||||||||| | |||||| | | | ||| || | ||||||||||||| ||||||  |||||||||| |||||||||||||| ||||||||||||    
T  28855797 aaaccttaaggcattagatttatgaggcatgtcacttataaagtactcaaccttcacttttccaagcaatgtcagacttctaactcacctcacacttgcc 28855896  T
Q  136 aca 138  Q
    |||    
T  28855897 aca 28855899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 1085678 - 1085711
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  1085678 caaaaccttaaggcaatgggtttatgggtcctct 1085711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 7517676 - 7517643
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  7517676 caaaaccttaaggcaatgggtttatgggtcctct 7517643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 22566724 - 22566757
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  22566724 caaaaccttaaggcaatgggtttatgggtcctct 22566757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 46411920 - 46411961
Alignment:
Q  82 tcaacctccactttatcaagcaatgtgagacttctaactcat 123  Q
    |||| ||||||||| |||| ||||||||||||||||||||||    
T  46411920 tcaatctccactttttcaaacaatgtgagacttctaactcat 46411961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 16569291 - 16569259
Alignment:
Q  35 aaaaccttaaggcattgggtttatgggtcctct 67  Q
    |||||||||||||| ||||||||||||||||||    
T  16569291 aaaaccttaaggcaatgggtttatgggtcctct 16569259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 16596371 - 16596403
Alignment:
Q  35 aaaaccttaaggcattgggtttatgggtcctct 67  Q
    |||||||||||||| ||||||||||||||||||    
T  16596371 aaaaccttaaggcaatgggtttatgggtcctct 16596403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 2336744 - 2336632
Alignment:
Q  10 tgagatggacatcatatcttaacacaaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccactttatcaagcaatgtga 109  Q
    |||| |||||| || |||||||| ||||| ||||||||||||  |||||||||||||||| || | ||||  ||||||||||||||   ||||||| |||    
T  2336744 tgagttggacaccacatcttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaacctccacttttctaagcaatttga 2336645  T
Q  110 gacttctaactca 122  Q
     ||||||||||||    
T  2336644 aacttctaactca 2336632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 29874085 - 29874146
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccacttt 95  Q
    ||||||||||||||| ||||||||||||||||| || || | ||||  ||||||||||||||    
T  29874085 caaaaccttaaggcaatgggtttatgggtcctcccaattataaagtgttcaacctccacttt 29874146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 31385833 - 31385745
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccactttatcaagcaatgtgagacttctaactca 122  Q
    ||||||||||||||| |||||||||||||||| ||| || | | || ||||||||||| |||   || | |||| ||||||||||||||    
T  31385833 caaaaccttaaggcaatgggtttatgggtcctttcacttataaggtgctcaacctccatttttctaaccgatgtcagacttctaactca 31385745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 13154491 - 13154532
Alignment:
Q  82 tcaacctccactttatcaagcaatgtgagacttctaactcat 123  Q
    ||||||||||||||   |||||||||||||||||||||||||    
T  13154491 tcaacctccacttttctaagcaatgtgagacttctaactcat 13154532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 14745729 - 14745762
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  14745729 caaaaccttaaggcaatgggtttatgggtcctct 14745762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 15880359 - 15880326
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  15880359 caaaaccttaaggcaatgggtttatgggtcctct 15880326  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 36178667 - 36178700
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  36178667 caaaaccttaaggcaatgggtttatgggtcctct 36178700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 38796682 - 38796715
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||||| ||||||||||||||||    
T  38796682 caaaaccttaaggcattaggtttatgggtcctct 38796715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 14745356 - 14745388
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctc 66  Q
    ||||||||||||||| |||||||||||||||||    
T  14745356 caaaaccttaaggcaatgggtttatgggtcctc 14745388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 17996071 - 17996133
Alignment:
Q  76 aagtactcaacctccactttatcaagcaatgtgagacttctaactcatctcacacttgccaca 138  Q
    ||||||||||||| ||||||  |||||||||| |||||||||||||| |||||||||| ||||    
T  17996071 aagtactcaaccttcacttttccaagcaatgtcagacttctaactcacctcacacttgacaca 17996133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 17294673 - 17294640
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  17294673 caaaaccttaaggcaatgggtttatgggtcctct 17294640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 28963615 - 28963586
Alignment:
Q  23 atatcttaacacaaaaccttaaggcattgg 52  Q
    ||||||||||||||||||||||||||||||    
T  28963615 atatcttaacacaaaaccttaaggcattgg 28963586  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 44290520 - 44290553
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  44290520 caaaaccttaaggcaatgggtttatgggtcctct 44290553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 44290887 - 44290920
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  44290887 caaaaccttaaggcaatgggtttatgggtcctct 44290920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 5034883 - 5034987
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccactttatcaagcaatgtgagacttctaactcatctcacacttg 133  Q
    |||||||||||  ||||| ||| ||||||| ||||| || | ||||  ||||||||||||||  ||||||||||| ||||  ||| ||| ||||||||||    
T  5034883 caaaaccttaaaacattgagttgatgggtcatctcacttataaagtggtcaacctccacttttccaagcaatgtgggactattaagtcacctcacacttg 5034982  T
Q  134 ccaca 138  Q
    |||||    
T  5034983 ccaca 5034987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 12092544 - 12092605
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccacttt 95  Q
    ||||||||||||||| || |||||||| |||||||| || | |||| |||||||||||||||    
T  12092544 caaaaccttaaggcaatgagtttatggatcctctcacttataaagtgctcaacctccacttt 12092605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 2377850 - 2377817
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  2377850 caaaaccttaaggcaatgggtttatgggtcctct 2377817  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 10074053 - 10074086
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  10074053 caaaaccttaaggcaatgggtttatgggtcctct 10074086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 3415553 - 3415521
Alignment:
Q  35 aaaaccttaaggcattgggtttatgggtcctct 67  Q
    |||||||||||||| ||||||||||||||||||    
T  3415553 aaaaccttaaggcaatgggtttatgggtcctct 3415521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 32445987 - 32445936
Alignment:
Q  28 ttaacacaaaaccttaaggcattgggtttatgggtcctctcagttgtcaagt 79  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||| ||||    
T  32445987 ttaacccaaaaccttaaggcgttgggtttatgggtcctctcacttgtaaagt 32445936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 18603182 - 18603215
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  18603182 caaaaccttaaggcaatgggtttatgggtcctct 18603215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 25328031 - 25327998
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||||| ||||||||||||||||    
T  25328031 caaaaccttaaggcattaggtttatgggtcctct 25327998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 26074708 - 26074675
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  26074708 caaaaccttaaggcaatgggtttatgggtcctct 26074675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 26075224 - 26075257
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  26075224 caaaaccttaaggcaatgggtttatgggtcctct 26075257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 31509727 - 31509658
Alignment:
Q  26 tcttaacacaaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccacttt 95  Q
    ||||| || ||||||| |||||| || ||||||| ||||||||| || | |||| |||||||||||||||    
T  31509727 tcttaccaaaaaacctcaaggcaatgagtttatgagtcctctcacttataaagtgctcaacctccacttt 31509658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 31509835 - 31509766
Alignment:
Q  26 tcttaacacaaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccacttt 95  Q
    ||||| || ||||||| |||||| || ||||||| ||||||||| || | |||| |||||||||||||||    
T  31509835 tcttaccaaaaaacctcaaggcaatgagtttatgagtcctctcacttataaagtgctcaacctccacttt 31509766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 32487489 - 32487456
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  32487489 caaaaccttaaggcaatgggtttatgggtcctct 32487456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 41170730 - 41170697
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  41170730 caaaaccttaaggcaatgggtttatgggtcctct 41170697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 11417036 - 11417072
Alignment:
Q  31 acacaaaaccttaaggcattgggtttatgggtcctct 67  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  11417036 acacaaaaccttaaggcaatgggtttatggatcctct 11417072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 50329386 - 50329428
Alignment:
Q  26 tcttaacacaaaaccttaaggcattgggtttatgggtcctctc 68  Q
    ||||||| ||||||||||||||||||| |||||||||||||||    
T  50329386 tcttaacccaaaaccttaaggcattggatttatgggtcctctc 50329428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 31264802 - 31264759
Alignment:
Q  84 aacctccactttatcaagcaatgtgagacttctaactcatctca 127  Q
    |||||||| ||| ||||| |||||||||||||||||||||||||    
T  31264802 aacctccattttttcaagtaatgtgagacttctaactcatctca 31264759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 22303721 - 22303754
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  22303721 caaaaccttaaggcaatgggtttatgggtcctct 22303754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 25317254 - 25317193
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctctcagttgtcaagtactcaacctccacttt 95  Q
    |||||||||||||||    ||||||||||||||||||||   |||| |||||||||||||||    
T  25317254 caaaaccttaaggcaacaagtttatgggtcctctcagttacaaagtgctcaacctccacttt 25317193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 32589799 - 32589766
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  32589799 caaaaccttaaggcaatgggtttatgggtcctct 32589766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 41359827 - 41359860
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  41359827 caaaaccttaaggcaatgggtttatgggtcctct 41359860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 33153604 - 33153565
Alignment:
Q  82 tcaacctccactttatcaagcaatgtgagacttctaactca 122  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  33153604 tcaacctccacttt-tcaagcaatatgagacttctaactca 33153565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 1754 - 1788
Alignment:
Q  35 aaaaccttaaggcattgggtttatgggtcctctca 69  Q
    |||||||||||||| ||||||||||||||||||||    
T  1754 aaaaccttaaggcaatgggtttatgggtcctctca 1788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 576 - 609
Alignment:
Q  34 caaaaccttaaggcattgggtttatgggtcctct 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  576 caaaaccttaaggcaatgggtttatgggtcctct 609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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