View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_160 (Length: 281)

Name: NF8912A_low_160
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_160
NF8912A_low_160
[»] chr6 (7 HSPs)
chr6 (8-277)||(2900530-2900799)
chr6 (10-277)||(8839116-8839378)
chr6 (11-245)||(6002403-6002632)
chr6 (88-277)||(30230443-30230630)
chr6 (109-250)||(7318334-7318477)
chr6 (111-251)||(15915853-15915992)
chr6 (88-246)||(22795392-22795552)
[»] chr8 (8 HSPs)
chr8 (23-277)||(36017088-36017346)
chr8 (10-277)||(29959765-29960026)
chr8 (10-266)||(27286920-27287172)
chr8 (107-277)||(12837985-12838153)
chr8 (202-272)||(27766472-27766541)
chr8 (88-250)||(5322956-5323120)
chr8 (136-240)||(17798615-17798720)
chr8 (143-235)||(15987827-15987920)
[»] chr5 (6 HSPs)
chr5 (11-253)||(43397881-43398123)
chr5 (76-272)||(32718246-32718440)
chr5 (107-243)||(6363478-6363613)
chr5 (10-211)||(17197566-17197767)
chr5 (147-235)||(43247378-43247467)
chr5 (147-235)||(43253843-43253932)
[»] chr7 (8 HSPs)
chr7 (11-266)||(33440270-33440521)
chr7 (10-266)||(7488839-7489091)
chr7 (67-179)||(34935505-34935617)
chr7 (172-250)||(21490538-21490616)
chr7 (197-266)||(38737490-38737558)
chr7 (24-114)||(34935400-34935487)
chr7 (143-231)||(14107573-14107662)
chr7 (143-231)||(14417530-14417619)
[»] chr2 (7 HSPs)
chr2 (10-277)||(3552428-3552699)
chr2 (10-271)||(36204180-36204436)
chr2 (80-277)||(18747180-18747375)
chr2 (10-248)||(19378037-19378271)
chr2 (108-277)||(25410600-25410768)
chr2 (118-240)||(19323076-19323198)
chr2 (21-249)||(31615438-31615672)
[»] chr1 (6 HSPs)
chr1 (93-277)||(40214036-40214218)
chr1 (78-277)||(9885732-9885924)
chr1 (78-160)||(17895420-17895502)
chr1 (111-275)||(47309474-47309636)
chr1 (78-164)||(16498510-16498595)
chr1 (197-253)||(17895500-17895556)
[»] chr4 (12 HSPs)
chr4 (17-266)||(7620528-7620773)
chr4 (88-254)||(32494930-32495095)
chr4 (88-272)||(25940047-25940229)
chr4 (76-274)||(25125360-25125552)
chr4 (72-244)||(53095359-53095530)
chr4 (12-272)||(36755865-36756130)
chr4 (10-226)||(19585628-19585855)
chr4 (10-272)||(24522307-24522570)
chr4 (217-277)||(40202583-40202642)
chr4 (136-231)||(9394149-9394245)
chr4 (222-266)||(24600564-24600607)
chr4 (108-155)||(36392355-36392403)
[»] chr3 (7 HSPs)
chr3 (77-277)||(9121148-9121346)
chr3 (10-209)||(23687464-23687659)
chr3 (10-209)||(24059701-24059896)
chr3 (145-249)||(22243478-22243583)
chr3 (77-248)||(44924260-44924432)
chr3 (88-234)||(27720490-27720638)
chr3 (78-250)||(22974844-22975017)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 2900799 - 2900530
Alignment:
Q  8 atggagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacg 107  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2900799 atggagttgatgaatcttgaattgtttctatgttgacagacgattcatacgctagtttaataatatctgtcattcacttcgtttgatttggactgtgagg 2900700  T
Q  108 ctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2900699 ctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaatcgtgtccgtgttgacggagggttcaatcaccgcatcaaagacc 2900600  T
Q  208 tttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatcatccgt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2900599 tttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatcacccgt 2900530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 8839378 - 8839116
Alignment:
Q  10 ggagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgct 109  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||| || ||  ||| ||   | ||   |||||| |||||||| ||||||||| |||    
T  8839378 ggagttgatggatcttgaattgtttctgtgttgccagacgattcatacgccagactaagaaccaccgt---tcactttgtttgatt-ggactgtgaggct 8839283  T
Q  110 cgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctt 209  Q
    ||||| ||||| ||| |||||||||||||||| |||||| ||||||||||||||||   | ||||||||  |||||||||||||| ||||| ||||  ||    
T  8839282 cgaaagggtcggttaacttgctgccattgttgcagggagctgatggtacatgaaccaccttcgtgttgagtgagggttcaatcactgcatcgaagatttt 8839183  T
Q  210 tagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatcatccgt 277  Q
    || |||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||||    
T  8839182 taattagttttaggaataattagaggttgatacacttgtgtgtt-gtttttatttttgtatcacccgt 8839116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 6002632 - 6002403
Alignment:
Q  11 gagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgctc 110  Q
    ||||| |||||||||||||||||||| |||||  |||||||||||| || |  |||| || | |    | |||||| |||||||| ||| ||||| ||||    
T  6002632 gagttaatggatcttgaattgtttctgtgttggtagacgattcatacgccaccttaagaacacc----actcactttgtttgatt-ggattgtgaggctc 6002538  T
Q  111 gaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagaccttt 210  Q
    |||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||  ||||||||||| ||||||||||||||| |||| ||   ||||    
T  6002537 gaaacggtcgtttagcttgctgacattgctgcagggagttgatggtacatgaaccgcctccgtgttgaccgagggttcaatcaccacatcgaaactcttt 6002438  T
Q  211 agttagttttaggattaattagaggttgatacact 245  Q
    | |||||||||| ||||||||||||||||||||||    
T  6002437 aattagttttagcattaattagaggttgatacact 6002403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 88 - 277
Target Start/End: Complemental strand, 30230630 - 30230443
Alignment:
Q  88 gtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggtt 187  Q
    ||||| |||| ||||||| |||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||     || |||||||| |||||||    
T  30230630 gtttggtttgaactgtgaggctcgaaagggtcatttagcttgctgccattgttgcagggagttga-ggtacatgaaaatcttcagtgttgactgagggtt 30230532  T
Q  188 caatcaccgcatcaaagacctttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatcatccgt 277  Q
    ||||||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||  ||| ||||||||||||| ||||    
T  30230531 caatcaccg-atcgaagacctttaattagttttagggttaattagaggttgatacacttgtgtgttattttaaatttttgtatcacccgt 30230443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 7318334 - 7318477
Alignment:
Q  109 tcgaaatggtcgtttagcttgctgccatt-gttgtagggagttgatggtacatgaac-cgtgtccgtgttgacggagggttcaatcaccgcatcaaagac 206  Q
    |||||| |||| ||||||||||||||||| |  | ||||||||||||||||||| || ||| | | |||||||||| |   | ||||| ||||  |||||    
T  7318334 tcgaaagggtcatttagcttgctgccatttggagcagggagttgatggtacatggactcgttttcatgttgacggacgaccctatcacggcattgaagac 7318433  T
Q  207 ctttagttagttttaggattaattagaggttgatacacttgtgt 250  Q
    ||||  ||||||||||||||||||||||| |||| |||||||||    
T  7318434 ctttgattagttttaggattaattagaggatgatccacttgtgt 7318477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 15915992 - 15915853
Alignment:
Q  111 gaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagaccttt 210  Q
    |||| ||||||| |||| | |||||||| || |||| ||||| |||||||||||||  || ||||||    || | |||||| ||||||| |||||||||    
T  15915992 gaaagggtcgttaagctcgttgccattgctgcagggcgttga-ggtacatgaaccgcctcagtgttggttaagagctcaatctccgcatcgaagaccttt 15915894  T
Q  211 agttagttttaggattaattagaggttgatacacttgtgtg 251  Q
    | ||||||||  ||||||| |||||||||||||||| ||||    
T  15915893 aattagtttttagattaataagaggttgatacacttatgtg 15915853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 246
Target Start/End: Complemental strand, 22795552 - 22795392
Alignment:
Q  88 gtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccatt-gttgtagggagttgatggtacatgaac-cgtgtccgtgttgacggaggg 185  Q
    |||||||||  |||||||  ||||||| |||| ||||||||||| || || |||||||||||||||||||||| |  | ||| ||| |||||| ||| ||    
T  22795552 gtttgatttaaactgtgagactcgaaagggtcatttagcttgcttccctttgttgtagggagttgatggtacaaggtctcgtttccatgttgatggaagg 22795453  T
Q  186 ttcaatcaccgcatcaaagacctttagttagttttaggattaattagaggttgatacactt 246  Q
    | |||||| |||||  || || |||   |||||||||||||||||||||| |||| |||||    
T  22795452 tccaatcatcgcattgaaaacttttgaatagttttaggattaattagaggatgatgcactt 22795392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 36017346 - 36017088
Alignment:
Q  23 cttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgctcgaaatggtcgtt 122  Q
    |||||||||||| | |||||| |||||||||||| || | ||||||||||| |||||||||||||||||||||||||||||||  || |||| |||||||    
T  36017346 cttgaattgtttatgtgttgatagacgattcatacgccaatttaataatatttgtcattcacttcgtttgatttggactgtgagacttgaaaaggtcgtt 36017247  T
Q  123 tagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctttagttagttttag 222  Q
    || |||||||||||||||| |||||||||||||||||||||||   | |||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  36017246 taacttgctgccattgttgcagggagttgatggtacatgaaccaccttcgtgttgacaaagggttcaatcaccgcatcaaagacctttagttagttttag 36017147  T
Q  223 gattaattagaggttg----atacacttgtgtgttggttttaatttttgtatcatccgt 277  Q
    ||||||||||||||||    |||||| ||||||||| ||||||||||||||||||||||    
T  36017146 gattaattagaggttgacacatacacctgtgtgttgtttttaatttttgtatcatccgt 36017088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 29960026 - 29959765
Alignment:
Q  10 ggagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgct 109  Q
    |||||| |||||||||||||||||||| ||||| ||||||   |||| || ||||||||||||| |||||||||||| |||| ||||||| ||||| |||    
T  29960026 ggagttgatggatcttgaattgtttctgtgttggcagacggcacatacgccagtttaataatat-tgtcattcactttgtttaatttggattgtgaggct 29959928  T
Q  110 cgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctt 209  Q
    ||||| ||||||||| |||| ||| ||||||| ||  |||||||||||||||||| || ||||| | ||| |||||||||||||||||    ||||| ||    
T  29959927 cgaaagggtcgtttatcttgttgctattgttgcagaaagttgatggtacatgaactgtctccgtatcgaccgagggttcaatcaccgc----aagacatt 29959832  T
Q  210 tagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatcatccgt 277  Q
     |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||    
T  29959831 gagttagttttaggattaattagagattgatacacttgtgtgtt-gttttaatttttgtatcacccgt 29959765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 27286920 - 27287172
Alignment:
Q  10 ggagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgct 109  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||| || |   ||| ||   ||||   |||||| |||||||| ||||||||| |||    
T  27286920 ggagttgatggatcttgaattgtttctgtgttggcagacgattcatacgccatgctaagaaccgctgt---tcactttgtttgatt-ggactgtgaggct 27287015  T
Q  110 cgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctt 209  Q
    ||||| |||||||||  ||| ||||||||||| |||||| ||||||||||||||||   ||||||||||| |||||||||||||||||||||||||| ||    
T  27287016 cgaaagggtcgtttaaattgatgccattgttgcagggagctgatggtacatgaaccacctccgtgttgactgagggttcaatcaccgcatcaaagacttt 27287115  T
Q  210 tagttagttttaggattaattagaggttgatacacttgtgtgttggttttaattttt 266  Q
    || |||||||||| ||||||||||||||||||||||||  ||||| ||||| |||||    
T  27287116 taattagttttagaattaattagaggttgatacacttgcatgttgtttttatttttt 27287172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 107 - 277
Target Start/End: Original strand, 12837985 - 12838153
Alignment:
Q  107 gctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagac 206  Q
    |||||||| ||||||| |||||| ||| ||||||| |||||||||| ||||||||||||      |||||| | ||||||||||||| | ||||||||||    
T  12837985 gctcgaaagggtcgttaagcttgatgcaattgttgcagggagttga-ggtacatgaaccaccctagtgttggctgagggttcaatcatcacatcaaagac 12838083  T
Q  207 ctttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatcatccgt 277  Q
     |||| ||||||||||||||||||| || | |||||| || |||||| |||||||||||||||||||||||    
T  12838084 ttttaattagttttaggattaattatagatcgatacaattatgtgtt-gttttaatttttgtatcatccgt 12838153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 27766541 - 27766472
Alignment:
Q  202 aagacctttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatca 272  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  27766541 aagacctttaattagttttaggattaattagaggttgatacactcgtgtgtt-gtttttatttttgtatca 27766472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 250
Target Start/End: Original strand, 5322956 - 5323120
Alignment:
Q  88 gtttgatttggactgtgacgctcgaaatggtcgtttagcttg-ctgccattgttgtagggagttgatggtacat-gaaccgtgtccgtgttgacggaggg 185  Q
    |||||||||||| ||||   ||||||||||||||||||||||  | || |||||| |||||| ||||||||||| ||  ||  | ||||| |||| | ||    
T  5322956 gtttgatttggagtgtgggactcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatggtacatagactcgctttcgtgtcgacgaacgg 5323055  T
Q  186 ttcaatcaccgcatcaaagacctttagttagttttaggattaattagaggttgatacacttgtgt 250  Q
    | ||||||| |||  | ||||||||  || |||||| ||||||||||||| |||| |||||||||    
T  5323056 tacaatcactgcactagagacctttgattcgttttatgattaattagagggtgatccacttgtgt 5323120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 17798615 - 17798720
Alignment:
Q  136 ttgttgtagggagttgatggtacat-gaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaattagag 234  Q
    |||||| |||||||||||||||||| || |||  |||||||||||| | | | |||||||| |||  |||||||||  ||||||||| |||||| ||||     
T  17798615 ttgttgcagggagttgatggtacatagatccgcttccgtgttgacgaacgatccaatcaccacattgaagacctttgattagttttatgattaaatagat 17798714  T
Q  235 gttgat 240  Q
    ||||||    
T  17798715 gttgat 17798720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 15987920 - 15987827
Alignment:
Q  143 agggagttgatggtacatgaacc-gtgtccgtgttgacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaattagagg 235  Q
    |||||||| |||||||||| ||| |  | |||||||||||| ||| || ||||||||   | |||||||  |||||||||||||||||||||||    
T  15987920 agggagtttatggtacatggacctgctttcgtgttgacggacggtccactcaccgcaatgatgacctttgattagttttaggattaattagagg 15987827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 43398123 - 43397881
Alignment:
Q  11 gagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgctc 110  Q
    ||||| ||| |||||||||||||||| ||||||||||||||| ||| || ||||||||||||| |||||||||||||||| |||||||||||||| |||     
T  43398123 gagttgatgcatcttgaattgtttctgtgttgacagacgatttatacgccagtttaataatatttgtcattcacttcgttagatttggactgtgaggctt 43398024  T
Q  111 gaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagaccttt 210  Q
    |||| | |||||||||||| || |||||||| ||| ||||||| ||||||||||||  ||||||||||| ||||||| ||||| |||||||||||||| |    
T  43398023 gaaaggatcgtttagcttgttgacattgttgcaggaagttgatagtacatgaaccgcttccgtgttgacagagggtttaatcatcgcatcaaagacctgt 43397924  T
Q  211 agttagttttaggattaattagaggttgatacacttgtgtgtt 253  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  43397923 agttagttttaggattaattagaagttgatacacttgtgtgtt 43397881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 76 - 272
Target Start/End: Complemental strand, 32718440 - 32718246
Alignment:
Q  76 gtcattcacttcgtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgt 175  Q
    ||||||||||| ||||| |||||| ||||  | |||||  ||| |||||||||| || |||||||| || ||||| | ||||| |||||||  || ||||    
T  32718440 gtcattcactttgtttggtttggattgtggggttcgaatgggttgtttagcttgttgtcattgttgcagagagttaa-ggtacgtgaaccgcctcagtgt 32718342  T
Q  176 tgacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatca 272  Q
    |||| |||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  32718341 tgactgagggttcaatcaccgcaccgaagacctttaattagttttaggattaattagaggttgatacacttgtgtgtt-gttataatttttgtatca 32718246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 107 - 243
Target Start/End: Complemental strand, 6363613 - 6363478
Alignment:
Q  107 gctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagac 206  Q
    |||||||| ||||||| |||||||||||| ||||| |||||||||| |||||||||||||  || |||||| | || ||||||||||||||||| || ||    
T  6363613 gctcgaaagggtcgttaagcttgctgccaatgttgcagggagttga-ggtacatgaaccggctcagtgttggctgaaggttcaatcaccgcatcgaaaac 6363515  T
Q  207 ctttagttagttttaggattaattagaggttgataca 243  Q
    ||||| ||||||||| ||||||||| |||||||||||    
T  6363514 ctttaattagttttatgattaattataggttgataca 6363478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 17197767 - 17197566
Alignment:
Q  10 ggagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgct 109  Q
    |||||| |||||||||| ||||||||||||||| ||||||||||||| |  || |||| | |    ||||||||||||||||| |||||||| ||  |||    
T  17197767 ggagttgatggatcttggattgtttctatgttggcagacgattcatacgtcagcttaagattc---gtcattcacttcgtttggtttggactatggggct 17197671  T
Q  110 cgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgt-gtccgtg---ttgacggagggttcaatcaccgcatcaaaga 205  Q
    ||||| ||||||| | |||| || |||||||| | |||||||| ||||||||||||||  || |||   ||||| |||||||||||||||  ||||||||    
T  17197670 cgaaagggtcgttaaacttgttgtcattgttgcaaggagttga-ggtacatgaaccgtcctcagtgtgtttgactgagggttcaatcaccatatcaaaga 17197572  T
Q  206 ccttta 211  Q
    ||||||    
T  17197571 ccttta 17197566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 43247467 - 43247378
Alignment:
Q  147 agttgatggtacatgaacc-gtgtccgtgttgacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaattagagg 235  Q
    ||||||||||||||| ||| |  | |||||||||||| ||| |||||||||||   |||||||||  |||  ||||||||||||||||||    
T  43247467 agttgatggtacatggacctgctttcgtgttgacggacggtccaatcaccgcacataagacctttgtttaactttaggattaattagagg 43247378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 43253932 - 43253843
Alignment:
Q  147 agttgatggtacatgaacc-gtgtccgtgttgacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaattagagg 235  Q
    ||||||||||||||| ||| |  | |||||||||||| ||| |||||||||||   |||||||||  |||  ||||||||||||||||||    
T  43253932 agttgatggtacatggacctgctttcgtgttgacggacggtccaatcaccgcacataagacctttgtttaactttaggattaattagagg 43253843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 33440270 - 33440521
Alignment:
Q  11 gagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgctc 110  Q
    ||||| ||||||||||| |||||||| ||||| | ||||||||||| || || |||| | | ||   ||||||||| || ||||||||| ||||  ||||    
T  33440270 gagttgatggatcttgacttgtttctgtgttggcggacgattcatacgccagcttaagattctc---cattcactttgtgtgatttggattgtgcggctc 33440366  T
Q  111 gaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagaccttt 210  Q
    |||| ||||||||| |||||||| |||||||||||||||||| |||||||||||||  ||||||||||| |||||||||||||||||||| |||||||||    
T  33440367 gaaagggtcgtttaacttgctgctattgttgtagggagttgaaggtacatgaaccgcctccgtgttgacagagggttcaatcaccgcatcgaagaccttt 33440466  T
Q  211 agttagttttaggattaattagaggttgatacacttgtgtgttggttttaattttt 266  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  33440467 agttagttttaggattaattagaggttgatacacttttgtgtt-gttttaattttt 33440521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 7488839 - 7489091
Alignment:
Q  10 ggagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgct 109  Q
    |||||| |||||||||||||||||| | || || | |  |||||||| ||||| |||||| |  |   ||||||||| ||||| |||||| ||||   ||    
T  7488839 ggagttgatggatcttgaattgtttatgtgctggccgttgattcatacgctagcttaatattcac---cattcactttgtttggtttggattgtgggact 7488935  T
Q  110 cgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctt 209  Q
     |||| |||||||||||||| || ||| |||| |||| ||||||| |||||||||||  | | ||||||  ||||||||||||||||||  |||||||||    
T  7488936 tgaaagggtcgtttagcttgatgtcatggttgcagggggttgatgctacatgaaccgcctacatgttgatagagggttcaatcaccgcacaaaagacctt 7489035  T
Q  210 tagttagttttaggattaattagaggttgatacacttgtgtgttggttttaattttt 266  Q
    || ||||||||||||||||||| |  |||||| ||||||||||| ||||||||||||    
T  7489036 taattagttttaggattaattacatattgataaacttgtgtgtt-gttttaattttt 7489091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 179
Target Start/End: Original strand, 34935505 - 34935617
Alignment:
Q  67 ataatatctgtcattcacttcgtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccg 166  Q
    |||||||  ||||||||||| |||||| |||||||  ||  ||||||| ||||||| | || ||||||||||||||||||||||||||||||||||||||    
T  34935505 ataatattcgtcattcactttgtttgacttggactcagagactcgaaagggtcgttaaactggctgccattgttgtagggagttgatggtacatgaaccg 34935604  T
Q  167 tgtccgtgttgac 179  Q
      |||||||||||    
T  34935605 cctccgtgttgac 34935617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 21490538 - 21490616
Alignment:
Q  172 gtgttgacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaattagaggttgatacacttgtgt 250  Q
    |||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| |||||    
T  21490538 gtgttgactgatggttcaatcaccgcatcgaagacctttagttacttttaggattaatcagaggttgatacacatgtgt 21490616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 38737490 - 38737558
Alignment:
Q  197 catcaaagacctttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaattttt 266  Q
    |||| |||||||||| ||||||||| |||||||||||||||||||||||||||| || ||||||||||||    
T  38737490 catccaagacctttaattagttttaagattaattagaggttgatacacttgtgtatt-gttttaattttt 38737558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 34935400 - 34935487
Alignment:
Q  24 ttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgctcgaaa 114  Q
    ||||||||||| | ||||| ||||||||||||| || | ||||||| |   |||||||||||| |||||||||||||||||| ||||||||    
T  34935400 ttgaattgtttatgtgttggcagacgattcatacgccaatttaatagt---tgtcattcactttgtttgatttggactgtgaggctcgaaa 34935487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 14107573 - 14107662
Alignment:
Q  143 agggagttgatggtacatgaa-ccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaatta 231  Q
    ||||||||||||||||||| | |||  ||||| |||||||| ||| |||||||||||   || ||||||  |||||||| ||||||||||    
T  14107573 agggagttgatggtacatggatccgcttccgtattgacggacggtccaatcaccgcaatgaacacctttgattagtttttggattaatta 14107662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 14417530 - 14417619
Alignment:
Q  143 agggagttgatggtacatgaa-ccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaatta 231  Q
    ||||||||||||||||||| | |||  ||||| |||||||| ||| |||||||||||   || ||||||  |||||||| ||||||||||    
T  14417530 agggagttgatggtacatggatccgcttccgtattgacggacggtccaatcaccgcaatgaacacctttgattagtttttggattaatta 14417619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 3552428 - 3552699
Alignment:
Q  10 ggagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgct 109  Q
    |||||| |||||||||||||||| ||| ||||| ||||||||||| | || | ||||||| |    ||||||||||| |||||||||| ||||||| |||    
T  3552428 ggagttgatggatcttgaattgtctctttgttggcagacgattcaaacgccaatttaatattc---gtcattcactttgtttgatttgaactgtgaggct 3552524  T
Q  110 cgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctt 209  Q
    ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||   |||||||||||||| |||| || |||||    
T  3552525 cgaaagggttgtttagcttgctgccattgttgcagggagttgatggtacatgaaccgcatccgtgttgagaaagggttcaatcaccacatcgaaaacctt 3552624  T
Q  210 tagttagttttaggattaa--------ttagaggttgatacacttgtgtgttggttttaatttttgtatcatccgt 277  Q
    |||||||||||||||||||        ||||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  3552625 tagttagttttaggattaattagagatttagaggttgatatacttgtgtgtt-gttttaatttttgtatcacccgt 3552699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 36204436 - 36204180
Alignment:
Q  10 ggagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgct 109  Q
    |||||| ||| |||||||||| ||||  ||||| ||||||||||||| |||||  ||| ||   ||||   |||||| |||||||| ||||||||| |||    
T  36204436 ggagttgatgaatcttgaattatttcagtgttggcagacgattcatacgctagactaagaaccgctgt---tcactttgtttgatt-ggactgtgaggct 36204341  T
Q  110 cgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctt 209  Q
    ||||| ||||||||| |||| ||||||||||| |||||| ||||||||||||||||   || |||||||| |||||||||||||||||||| ||||||||    
T  36204340 cgaaagggtcgtttaacttgttgccattgttgcagggagctgatggtacatgaaccacctctgtgttgaccgagggttcaatcaccgcatcgaagacctt 36204241  T
Q  210 tagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatc 271  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  36204240 taattagttttaggattaattagaggttgatacacttgtgtgtt-gtttttatttttgtatc 36204180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 80 - 277
Target Start/End: Original strand, 18747180 - 18747375
Alignment:
Q  80 ttcacttcgtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgac 179  Q
    ||||||| |||||||| ||||||||| |||||||| ||| ||||| ||||||  || |||||||||||| ||||||||||||||||   |||||||||||    
T  18747180 ttcactttgtttgatt-ggactgtgaggctcgaaagggttgtttaacttgctttcaatgttgtagggagctgatggtacatgaacctcctccgtgttgac 18747278  T
Q  180 ggagggttcaatcaccgcatcaaagacctttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatcatccgt 277  Q
     |||||||||||||||||||| ||||||| || || ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||    
T  18747279 cgagggttcaatcaccgcatcgaagacctctaatttgttttaggattaattagaggttgatacacttatgtgtt-gtttttatttttgtatcatccgt 18747375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 19378037 - 19378271
Alignment:
Q  10 ggagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgct 109  Q
    |||||| |||||||||||||||||| | ||||||||||||||||||| || ||  ||| ||   | | | ||||||| |||||||| ||||| | | |||    
T  19378037 ggagttgatggatcttgaattgtttttgtgttgacagacgattcatacgccagactaagaa---ccgccgttcactttgtttgatt-ggactctaaggct 19378132  T
Q  110 cgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctt 209  Q
    |||||||||  |||| |||||||||||||||| | |||| ||||||||||||||||   ||||||||||| |||||||||||||||||||| |||| |||    
T  19378133 cgaaatggttatttaacttgctgccattgttgcacggagctgatggtacatgaaccacctccgtgttgactgagggttcaatcaccgcatcgaagatctt 19378232  T
Q  210 tagttagttttaggattaattagaggttgatacacttgt 248  Q
    || |||| |||||||||||||||||||||||||||||||    
T  19378233 taattagctttaggattaattagaggttgatacacttgt 19378271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 108 - 277
Target Start/End: Complemental strand, 25410768 - 25410600
Alignment:
Q  108 ctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacc 207  Q
    |||||||||||||||||||||||||| |||||||  | |||| |||||| |||||||||  ||||||||||  ||| ||||||||| |||||||||||||    
T  25410768 ctcgaaatggtcgtttagcttgctgctattgttgcggcgagtcgatggtgcatgaaccgcctccgtgttgatcgagagttcaatcatcgcatcaaagacc 25410669  T
Q  208 tttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatcatccgt 277  Q
    |||| || |||||||||||||||||||||| ||||| | ||||||| |||||||||||||||||| ||||    
T  25410668 tttaattggttttaggattaattagaggttaatacattcgtgtgtt-gttttaatttttgtatcacccgt 25410600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 19323198 - 19323076
Alignment:
Q  118 tcgtttagcttgctgccatt-gttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctttagttag 216  Q
    |||||||||||| ||||||| |||| | |||||||||| ||||||||||   |||||||||||||| ||| || |||| ||||  ||||||||||  |||    
T  19323198 tcgtttagcttgttgccattagttgcatggagttgatg-tacatgaaccacttccgtgttgacggacggtccagtcactgcattgaagacctttaagtag 19323100  T
Q  217 ttttaggattaattagaggttgat 240  Q
    ||||||||||||||||||| ||||    
T  19323099 ttttaggattaattagaggctgat 19323076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 31615672 - 31615438
Alignment:
Q  21 atcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatt----tggactgtgacgctcgaaatg 116  Q
    ||||||||| |||||| ||||| |||||||||||||||| |  |||| | |  |   ||||||||| ||||||||    |||||| |||  ||||||| |    
T  31615672 atcttgaatggtttctgtgttggcagacgattcatatgccaacttaagattcac---cattcactttgtttgattggtttggactctgagactcgaaagg 31615576  T
Q  117 gtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgc------atcaaagaccttt 210  Q
    ||||||||||||||||| | ||||| ||| ||||| |||||||||| |||  ||   || ||| || |||||||||| |        ||| |||||||||    
T  31615575 gtcgtttagcttgctgctaatgttgcaggaagttg-tggtacatgacccgcctcacagtggactgaaggttcaatcatcaattactgatcgaagaccttt 31615477  T
Q  211 agttagttttaggattaattagaggttgatacacttgtg 249  Q
    | |||||| ||||||||||||||||||| ||||||||||    
T  31615476 aattagttctaggattaattagaggttgttacacttgtg 31615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 93 - 277
Target Start/End: Original strand, 40214036 - 40214218
Alignment:
Q  93 atttggactgtgacgctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatc 192  Q
    ||||||||||||| ||||||||  ||||||||||||||| ||||| ||| ||| ||||||||||||||||||||  ||||  ||||  ||||||||||||    
T  40214036 atttggactgtgaggctcgaaagagtcgtttagcttgct-ccattattgcaggaagttgatggtacatgaaccgcctccgcattgaaagagggttcaatc 40214134  T
Q  193 accgcatcaaagacctttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatcatccgt 277  Q
    |||||||| |||| ||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||    
T  40214135 accgcatcgaagatctttatttagttttaggattaattcaaggttgatacacttgtgtgtt-gttttaatttttgcatcatccgt 40214218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 277
Target Start/End: Original strand, 9885732 - 9885924
Alignment:
Q  78 cattcacttcgtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttg 177  Q
    |||||| || ||||| |||||||||||  ||| |||| ||| || |||| |||||||||||||| |  |||||||      ||||||||  |  ||||||    
T  9885732 cattcaatttgtttggtttggactgtggggcttgaaagggttgtatagcctgctgccattgttgcatagagttga------atgaaccgccttagtgttg 9885825  T
Q  178 acggagggttcaatcaccgcatcaaagacctttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatcatccgt 277  Q
    || |||||||||||||| | ||| || ||||| | |||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| ||||    
T  9885826 actgagggttcaatcactggatcgaaaaccttcatttagttttaggattaactagaggttgatacacttgtgtatt-gttttaatttttgtatcacccgt 9885924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 17895420 - 17895502
Alignment:
Q  78 cattcacttcgtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacat 160  Q
    ||||||||| |||||||||||| ||||| ||||||||| ||||||||||||| || |||||||| |||||||||| |||||||    
T  17895420 cattcactttgtttgatttggattgtgaggctcgaaatagtcgtttagcttgttgtcattgttgcagggagttgaaggtacat 17895502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 275
Target Start/End: Complemental strand, 47309636 - 47309474
Alignment:
Q  111 gaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagaccttt 210  Q
    |||| ||| ||||| ||||||| ||||||||  | ||||| | |||||||||||||  || |||||||  ||| |||| ||||| ||||| |||||||||    
T  47309636 gaaagggtagtttatcttgctgtcattgttgctgagagttaa-ggtacatgaaccgcctcagtgttgagcgagagttccatcactgcatcgaagaccttt 47309538  T
Q  211 agttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatcatcc 275  Q
    | |||| ||||| ||||||||||   ||||||||||||| ||| |||||||||||||||| ||||    
T  47309537 aattagatttagaattaattagaatatgatacacttgtgcgtt-gttttaatttttgtattatcc 47309474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 16498510 - 16498595
Alignment:
Q  78 cattcacttcgtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaac 164  Q
    |||||||||  ||||||| ||| ||||| |||||||| ||| |||||||||| ||  ||||||| ||||||||||||||||||||||    
T  16498510 cattcactttatttgatt-ggattgtgaggctcgaaagggtagtttagcttgttgttattgttgcagggagttgatggtacatgaac 16498595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 17895500 - 17895556
Alignment:
Q  197 catcaaagacctttagttagttttaggattaattagaggttgatacacttgtgtgtt 253  Q
    |||| |||| ||||||||||||||||||||||| | ||||||||| |||| ||||||    
T  17895500 catcgaagagctttagttagttttaggattaataataggttgatagacttatgtgtt 17895556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 7620773 - 7620528
Alignment:
Q  17 atggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgctcgaaatg 116  Q
    |||||||||||||||||| | |||||  |||||||||||| || |  |||| | |   || ||||||||| ||||| |||||||| ||  |||||||| |    
T  7620773 atggatcttgaattgtttttgtgttggtagacgattcatacgccatcttaagatt---tgccattcactttgtttggtttggactttggggctcgaaagg 7620677  T
Q  117 gtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctttagttag 216  Q
    |  |||||| ||| |||||||||||||||||||||||||||||||||| |  ||||||||||| ||||||||||||| |||||  |||||||| | ||||    
T  7620676 gctgtttaggttgttgccattgttgtagggagttgatggtacatgaactgcctccgtgttgacagagggttcaatcatcgcatagaagaccttcaattag 7620577  T
Q  217 ttttaggattaattagaggttgatacacttgtgtgttggttttaattttt 266  Q
    ||||||||||||||||| |||||||||| || ||||| ||||||||||||    
T  7620576 ttttaggattaattagaagttgatacacctgcgtgtt-gttttaattttt 7620528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 88 - 254
Target Start/End: Complemental strand, 32495095 - 32494930
Alignment:
Q  88 gtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggtt 187  Q
    ||||| ||||||||||||  ||||||| ||| ||||||||||||||| |||||| |||||||||| |||||||||||||  || |||||||| |||||||    
T  32495095 gtttgttttggactgtgagactcgaaagggttgtttagcttgctgcctttgttgcagggagttga-ggtacatgaaccgcctcagtgttgaccgagggtt 32494997  T
Q  188 caatcaccgcatcaaagacctttagttagttttaggattaattagaggttgatacacttgtgtgttg 254  Q
    |||||||| |||  |||||||||| ||| |||||||||||| |||||||||||||||||||||||||    
T  32494996 caatcaccacattgaagacctttatttaattttaggattaactagaggttgatacacttgtgtgttg 32494930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 88 - 272
Target Start/End: Complemental strand, 25940229 - 25940047
Alignment:
Q  88 gtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggtt 187  Q
    ||||| |||| ||||||| |||||||| |||  ||||||||||| ||||||||| |||||||||| ||||||||||||   || |||||||| |||||||    
T  25940229 gtttggtttgaactgtgaggctcgaaagggttatttagcttgctaccattgttgcagggagttga-ggtacatgaacctcttcagtgttgactgagggtt 25940131  T
Q  188 caatcaccgcatcaaagacctttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatca 272  Q
    ||||||||| ||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||  ||| ||||||| |||||    
T  25940130 caatcaccg-atcgaagacctttaattagttttagggttaattagaagttgatacacttgtgtgttattttaaatttttatatca 25940047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 76 - 274
Target Start/End: Complemental strand, 25125552 - 25125360
Alignment:
Q  76 gtcattcacttcgtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgt 175  Q
    ||||||||||| ||||| |||||| ||||  |||||||| ||||||| |||||| ||| ||| |||||||  ||||| ||||||||||||   |  ||||    
T  25125552 gtcattcactttgtttggtttggattgtggggctcgaaagggtcgttaagcttgttgctatttttgtaggatgttga-ggtacatgaaccaccttagtgt 25125454  T
Q  176 tgacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatcatc 274  Q
    |||| |||||||||||||| ||||| |||||||||| |||||    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  25125453 tgactgagggttcaatcactgcatcgaagacctttaattagt----ggattaactagaggttgatacacttgtgtgtt-gttttaatttttgtatcatc 25125360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 72 - 244
Target Start/End: Original strand, 53095359 - 53095530
Alignment:
Q  72 atctgtcattcacttcgtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtcc 171  Q
    ||||||| ||||||| |||||||||||||| ||| ||| |||||||| | |||||||| || |||||||| | | ||||||||||| |||||| |  |||    
T  53095359 atctgtcgttcactttgtttgatttggactttgaggcttgaaatggttggttagcttgttgtcattgttgcatgaagttgatggtatatgaactgcctcc 53095458  T
Q  172 gtgttgacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaattagaggttgatacac 244  Q
    |||||||| || |||| |||||||||||| ||||  |||||||||||||| ||||||||||||||||||||||    
T  53095459 gtgttgacagaaggtttaatcaccgcatcgaagatatttagttagtttta-gattaattagaggttgatacac 53095530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 272
Target Start/End: Original strand, 36755865 - 36756130
Alignment:
Q  12 agttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttc-gtttgatttggactgtgacgctc 110  Q
    |||| |||||||||||||||| ||||||||| ||||| ||||||| |  || |||| | |  ||   ||||||||  ||||||||| ||||| || ||||    
T  36755865 agttgatggatcttgaattgtctctatgttgccagacaattcatacgtaagcttaagatttgct---attcacttttgtttgatttagactgagaggctc 36755961  T
Q  111 gaaa-tggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctt 209  Q
    |||| |||| || |||||| ||||||||||||||| |||||||||||||||||  |   || |||||||| || ||||||||||||||||| |||| |||    
T  36755962 gaaaatggt-gtatagctttctgccattgttgtagagagttgatggtacatgagtcacctcagtgttgactgatggttcaatcaccgcatcgaagatctt 36756060  T
Q  210 tagttagttttaggattaattagaggttg--------atacacttgtgtgttggttttaatttttgtatca 272  Q
    || ||||||||||||||||||||||| ||        ||||||||||||||| ||||||||||||||||||    
T  36756061 taattagttttaggattaattagaggctgataaacttatacacttgtgtgtt-gttttaatttttgtatca 36756130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 19585855 - 19585628
Alignment:
Q  10 ggagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgct 109  Q
    |||||| || ||||||||||||||||  | ||| |||||||||| |  || ||||||||||||| |||||||||||   |||||||||||||||||||||    
T  19585855 ggagttgatagatcttgaattgtttccgttttggcagacgattcctgcgccagtttaataatatttgtcattcactatatttgatttggactgtgacgct 19585756  T
Q  110 c-----------gaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgca 198  Q
    |           |||| | ||||| |||||||||||||||||| ||||||||||||||||||||||    ||  |||| ||  | |||||||||||||||    
T  19585755 cgaaaggatctcgaaaggatcgttaagcttgctgccattgttgcagggagttgatggtacatgaactacctctatgttaacacaaggttcaatcaccgca 19585656  T
Q  199 tcaaagacctttagttagttttaggatt 226  Q
    || || | |||||||||||| |||||||    
T  19585655 tcgaatagctttagttagttgtaggatt 19585628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 24522307 - 24522570
Alignment:
Q  10 ggagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgct 109  Q
    |||||| |||||||||||||||||||| || |  ||||||||||||| || ||  ||  ||   ||| ||||||||| |||||||| |||  |||| |||    
T  24522307 ggagttgatggatcttgaattgtttctgtgctagcagacgattcatacgccagactatgaa---ctgccattcactttgtttgatt-ggaaagtgaggct 24522402  T
Q  110 cgaaatggtcgtttagcttgctgccattgttgtagggagt--tgatggtacatga---accgtgtccgtgttgacggagggttcaatcaccgcatcaaag 204  Q
    |||||  ||||||||  ||| |  |||||||| ||||||   |||||||||||||   |||   | ||| ||||  |||||||||||||| ||||| |||    
T  24522403 cgaaagcgtcgtttaatttgttatcattgttgcagggagagatgatggtacatgatcaaccaccttcgtcttgagcgagggttcaatcacagcatcgaag 24522502  T
Q  205 acctttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatca 272  Q
    || |||| ||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||    
T  24522503 acttttaattagttttaggattaattagaggttgacacacttgtctgttgtttttattttttgtatca 24522570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 40202642 - 40202583
Alignment:
Q  217 ttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatcatccgt 277  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  40202642 ttttatgattaattagaggttgatacacttgggtgtt-gttttaatttttgtatcatccgt 40202583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 9394245 - 9394149
Alignment:
Q  136 ttgttgtagggagttgatggtacatgaa-ccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaatta 231  Q
    |||||| ||||||||||||||||||| | ||   |||||||||||||| ||| |||||||| ||   || |||||| ||||||||||||||||||||    
T  9394245 ttgttgcagggagttgatggtacatggatccacttccgtgttgacggacggtccaatcaccacaatgaacacctttggttagttttaggattaatta 9394149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 24600564 - 24600607
Alignment:
Q  222 ggattaattagaggttgatacacttgtgtgttggttttaattttt 266  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  24600564 ggattaattagaggttgatacacttgtgt-tttgttttaattttt 24600607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 36392403 - 36392355
Alignment:
Q  108 ctcgaaatggtcgtttagcttgctgcca-ttgttgtagggagttgatgg 155  Q
    ||||||| |||||||||||||||||||| ||| || |||||||||||||    
T  36392403 ctcgaaagggtcgtttagcttgctgccatttgctgcagggagttgatgg 36392355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 77 - 277
Target Start/End: Original strand, 9121148 - 9121346
Alignment:
Q  77 tcattcacttcgtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgtt 176  Q
    |||||||||| |||||||| |||  |||| ||||||||  ||||||||  ||  ||||||||||| |||||||||| | ||||||||||   ||||| ||    
T  9121148 tcattcactttgtttgatt-ggaaagtgaggctcgaaagcgtcgtttaattttttgccattgttgcagggagttgacgatacatgaaccacctccgtctt 9121246  T
Q  177 gacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaattagaggttgatacacttgtgtgttggttttaatttttgtatcatccg 276  Q
    ||  |||||||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |||    
T  9121247 gagcgagggttcaatcacagcatcgaagacttttaattagttttaggattaattagaggttgatacacttgtatgtt-gtttttatttttgtatcacccg 9121345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 23687659 - 23687464
Alignment:
Q  10 ggagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgct 109  Q
    |||||| ||||||||||||||||| || ||||  |||| |||||||  || || |||| | |   |||||||||||| |||||||||||||||||| |||    
T  23687659 ggagttgatggatcttgaattgttcctgtgttagcagatgattcattcgccagcttaagatt---tgtcattcactttgtttgatttggactgtgaggct 23687563  T
Q  110 cgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctt 209  Q
    ||||| ||  |||||||||||||| ||||||| | ||||||||||||||||||||||  |||||||| ||  ||||||||||||||||||| ||||||||    
T  23687562 cgaaagggctgtttagcttgctgctattgttgca-ggagttgatggtacatgaaccgcctccgtgtttacaaagggttcaatcaccgcatcgaagacctt 23687464  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 24059896 - 24059701
Alignment:
Q  10 ggagttcatggatcttgaattgtttctatgttgacagacgattcatatgctagtttaataatatctgtcattcacttcgtttgatttggactgtgacgct 109  Q
    |||||| ||||||||||||||||| || ||||  |||| |||||||  || || |||| | |   |||||||||||| |||||||||||||||||| |||    
T  24059896 ggagttgatggatcttgaattgttcctgtgttagcagatgattcattcgccagcttaagatt---tgtcattcactttgtttgatttggactgtgaggct 24059800  T
Q  110 cgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctt 209  Q
    ||||| ||  |||||||||||||| ||||||| | ||||||||||||||||||||||  |||||||| ||  ||||||||||||||||||| ||||||||    
T  24059799 cgaaagggctgtttagcttgctgctattgttgca-ggagttgatggtacatgaaccgcctccgtgtttacaaagggttcaatcaccgcatcgaagacctt 24059701  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 22243583 - 22243478
Alignment:
Q  145 ggagttgatggtacatgaac-cgtgtccgtgttgacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaattagaggttgataca 243  Q
    ||||||||||||||||| || |  ||| ||||||||||| ||| ||||||||||||  |||| ||||  |||||||||||||||||||||||  ||| ||    
T  22243583 ggagttgatggtacatggactcccgtcggtgttgacggacggtccaatcaccgcattgaagatcttttattagttttaggattaattagaggaggatcca 22243484  T
Q  244 cttgtg 249  Q
    ||||||    
T  22243483 cttgtg 22243478  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 248
Target Start/End: Complemental strand, 44924432 - 44924260
Alignment:
Q  77 tcattcacttcgtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccattgttgtagggagttgatggtacatgaaccgtgtccgtgtt 176  Q
    |||||||| | |||||||||||| | ||| |||| |||   |||||||  ||||||||||| ||| |||||||||| | ||||||||| |  ||| | ||    
T  44924432 tcattcaccttgtttgatttggattctgaggctcaaaagaatcgtttactttgctgccattattgcagggagttgaagatacatgaactgcctccatatt 44924333  T
Q  177 gacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaattagagg-ttgatacacttgt 248  Q
     |  |||||||||||||| ||||| || || |||| ||||| ||  ||||||||||||| |||||||||||||    
T  44924332 aatagagggttcaatcactgcatcgaatacatttaattagtcttcagattaattagaggattgatacacttgt 44924260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 234
Target Start/End: Complemental strand, 27720638 - 27720490
Alignment:
Q  88 gtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgccatt-gttgtagggagttgatggtacatgaa-ccgtgtccgtgttgacggaggg 185  Q
    |||||| ||||||||||  |||| ||||  | ||||| |||||||||||| |||| || |||||||||||||||| | |||| ||||||| |||||| |     
T  27720638 gtttgacttggactgtggggctcaaaatacttgtttaccttgctgccattcgttgcagtgagttgatggtacatggatccgtttccgtgtcgacggatga 27720539  T
Q  186 ttcaatcaccgcatcaaagacctttagttagttttaggattaattagag 234  Q
    | || |||||| ||  |||||| ||  ||||||||||| ||||||||||    
T  27720538 tccattcaccgaattgaagaccattgattagttttagggttaattagag 27720490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 22974844 - 22975017
Alignment:
Q  78 cattcacttcgtttgatttggactgtgacgctcgaaatggtcgtttagcttgctgcc-attgttgtagggagttgatggtacatgaac-cgtgtccgtgt 175  Q
    ||||||||  ||||||||| ||||||||  ||||||| ||| |||||||||||||||  ||| || |||||||| |||||||||| || ||  ||||| |    
T  22974844 cattcactatgtttgatttagactgtgagactcgaaagggttgtttagcttgctgccttttgctgcagggagtttatggtacatggactcgcttccgttt 22974943  T
Q  176 tgacggagggttcaatcaccgcatcaaagacctttagttagttttaggattaattagaggttgatacacttgtgt 250  Q
    ||||| | ||   ||| |||||| | || ||||||  ||| ||||||||||||||||| | |||| |||||||||    
T  22974944 tgacgaacggcctaattaccgca-ctaatacctttgattaattttaggattaattagaagatgatccacttgtgt 22975017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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