View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_166 (Length: 278)
Name: NF8912A_low_166
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_166 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 5995788 - 5996059
Alignment:
| Q |
1 |
tcaatatttccaatcataaataactctctttcagtcaaaaccaattctatataaccaatttattcaaaattaatttttgtgactgctgaaccaagcatac |
100 |
Q |
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| T |
5995788 |
tcaatatttccaatcataaataactctcttttagtcaaaaccaattctatataaccaatttattcaaaattaatttttgtgactgctgaaccaagcatac |
5995887 |
T |
|
| Q |
101 |
attttattttttggaggttggtttattgtttattgttggtaactgatcttggttactttgtttgtgtgcagcgtcctcctttctacaattttaaggtggg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5995888 |
attttattttttggaggttggtttattgtttattgttggtaactgattttggttactttgtttgtgtgcagcgtcctcctttctacaattttaagatggg |
5995987 |
T |
|
| Q |
201 |
gattcctttggctgctaaacgtgcttttaagctttctactgttgctttcattttttctgctatattcttgga |
272 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |
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| T |
5995988 |
gattcctttggctgctaaacgtgcttttaagctttccactgttgctttcattttttctgctattttattgga |
5996059 |
T |
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