View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_167 (Length: 278)
Name: NF8912A_low_167
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_167 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 4 - 270
Target Start/End: Complemental strand, 43142321 - 43142055
Alignment:
| Q |
4 |
ggagaagcatagaccaaaccttttcaggggaatgtgtcctatatgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgt |
103 |
Q |
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| T |
43142321 |
ggagatgcacagaccaaaccttttcaggggaatgtgtcctatatgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgt |
43142222 |
T |
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| Q |
104 |
catgacaaaggaaagaaaggctattgccattcttcatagcatccttcatttgtttgatcgctctgttcctgtaagggggaagatgcagtctttctcatag |
203 |
Q |
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| T |
43142221 |
catgacaaaggaaagaaaggctattgccattcttcatagcatctttcatttgtttgatcgctctgttcctgtaagggggaagatgcagtctttctcatag |
43142122 |
T |
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| Q |
204 |
gcgcatgacaacggaagcgtttccagattctatgacattcattattaagtaatgagtacctaaaata |
270 |
Q |
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| T |
43142121 |
gcgcatgacaacggaagcgtttccagattctatgacattcattattaagtaatgagtacctaaaata |
43142055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 43153875 - 43153741
Alignment:
| Q |
46 |
atgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgtcatgacaaaggaaagaaaggctattgccattcttcatagcat |
145 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| | |
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| T |
43153875 |
atgactactgttactcttggaagattggcctgatagaagtgctcaagctcatttatgtcatgacataggaaagaaagactattgccattctgcatagctt |
43153776 |
T |
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| Q |
146 |
ccttcatttgtttgatcgctctgttcctgtaaggg |
180 |
Q |
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| T |
43153775 |
ccttcatttgttttatctctctgttcctgtaaggg |
43153741 |
T |
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