View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_168 (Length: 277)
Name: NF8912A_low_168
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_168 |
 | |
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| [»] chr8 (6 HSPs) |
| |
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| [»] chr5 (3 HSPs) |
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|
| [»] scaffold0468 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 6 - 277
Target Start/End: Complemental strand, 3399308 - 3399037
Alignment:
| Q |
6 |
agaacaggcagaattatatttggtactgattctttgcaggagatgcaaaagctgagacttttaaaacttgatggtgttcaccttatgggagaatatgggt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3399308 |
agaacaggcagaattatatttggtactgattctttgcaggagatgcaaaagctgagacttttaaaacttgatggtgttcaccttatgggagaatatgggt |
3399209 |
T |
|
| Q |
106 |
taatttccaaacaactgagatgggttgattggcaacgatctgctttcaaatttataccgaatgactttgatctggaaaatttagttgtttttgaattaaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3399208 |
taatttccaaacaactgagatgggttgattggcaacgatctgctttcaaatttataccgaatgactttgatctggaaaatttagttgtttttgaattaaa |
3399109 |
T |
|
| Q |
206 |
acatagcaatcttagacaagtttggcaggagaccaaggtataacaacattttctctcgaaactcaaaggttg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
3399108 |
acatagcaatcttagacaagtttggcaggagaccaaggtataacaacattttctctcaaaactcaaaggttg |
3399037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 277
Target Start/End: Original strand, 31175246 - 31175517
Alignment:
| Q |
6 |
agaacaggcagaattatatttggtactgattctttgcaggagatgcaaaagctgagacttttaaaacttgatggtgttcaccttatgggagaatatgggt |
105 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
31175246 |
agaacaggcaggattatatttggtactaattctttccaggagatgcaaaagctgaggcttttaaaacttgatggtgttcaccttatgggagattatgggt |
31175345 |
T |
|
| Q |
106 |
taatttccaaacaactgagatgggttgattggcaacgatctgctttcaaatttataccgaatgactttgatctggaaaatttagttgtttttgaattaaa |
205 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
31175346 |
taatttccaaacaactaagatgggttgattggcaacgatctaccttcaaatttataccgaatgactttgatctggaaaatctagttgtttttgaattaaa |
31175445 |
T |
|
| Q |
206 |
acatagcaatcttagacaagtttggcaggagaccaaggtataacaacattttctctcgaaactcaaaggttg |
277 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||| || | ||||||| |||||| |
|
|
| T |
31175446 |
acatggcaatgttagacaagtttggcaggagaccaaggtataacaacatttgcttttaaaactcacaggttg |
31175517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 60 - 259
Target Start/End: Complemental strand, 3408067 - 3407868
Alignment:
| Q |
60 |
agacttttaaaacttgatggtgttcaccttatgggagaatatgggttaatttccaaacaactgagatgggttgattggcaacgatctgctttcaaattta |
159 |
Q |
| |
|
||||||||| |||||||| ||||| |||| | ||||| | ||||| ||||||||||| |||||||||| |||||||||||||| | ||||| ||| |
|
|
| T |
3408067 |
agacttttacaacttgatcgtgttgacctcactggagattttgggtatctttccaaacaattgagatgggtcaattggcaacgatctaccttcaactttg |
3407968 |
T |
|
| Q |
160 |
taccgaatgactttgatctggaaaatttagttgtttttgaattaaaacatagcaatcttagacaagtttggcaggagaccaaggtataacaacattttct |
259 |
Q |
| |
|
|||| || |||||||||| ||||||| | |||| ||||||||||||| |||||||| ||| |||||||||| |||| |||||||||||| | |||||||| |
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|
| T |
3407967 |
tacccaacgactttgatcaggaaaatctcgttgcttttgaattaaaatatagcaatgttaaacaagtttggaaggaaaccaaggtataatagcattttct |
3407868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 3287210 - 3287071
Alignment:
| Q |
109 |
tttccaaacaactgagatgggttgattggcaacgatctgctttcaaatttataccgaatgactttgatctggaaaatttagttgtttttgaattaaaaca |
208 |
Q |
| |
|
|||| ||| |||| |||||||| |||||||| ||| | | ||||| | |||||| |||||||| ||| | |||| |||||||||||||||||||||| |
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|
| T |
3287210 |
tttctaaagaacttagatgggtccattggcaaggatttaccttcaactgtatacctgatgactttcatcaaggaaatctagttgtttttgaattaaaaca |
3287111 |
T |
|
| Q |
209 |
tagcaatcttagacaagtttggcaggagaccaaggtataa |
248 |
Q |
| |
|
||||| ||| |||||| ||| | | |||||||||||| |
|
|
| T |
3287110 |
cagcaacattaaacaagtatggaataaaaccaaggtataa |
3287071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 7165392 - 7165319
Alignment:
| Q |
57 |
ctgagacttttaaaacttgatggtgttcaccttatgggagaatatgggttaatttccaaacaactgagatgggt |
130 |
Q |
| |
|
|||| ||||||| |||||||| ||||| |||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
7165392 |
ctgaaacttttacaacttgattgtgttgacctcgctggagattatgggtgtatttccaaacaactgagatgggt |
7165319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 248
Target Start/End: Original strand, 13786899 - 13787087
Alignment:
| Q |
60 |
agacttttaaaacttgatggtgttcaccttatgggagaatatgggttaatttccaaacaactgagatgggttgattggcaacgatctgctttcaaattta |
159 |
Q |
| |
|
|||||| | ||||||||| ||||| |||| | ||||| ||||| | |||| ||| ||||||| ||||| ||||| || ||| | | ||||| | || |
|
|
| T |
13786899 |
agacttctgaaacttgatcgtgttgacctcactggagattatggttacctttctaaagaactgaggtgggtccattggaaaggatttaccttcaactata |
13786998 |
T |
|
| Q |
160 |
taccgaatgactttgatctggaaaatttagttgtttttgaattaaaacatagcaatcttagacaagtttggcaggagaccaaggtataa |
248 |
Q |
| |
|
|||| |||||||| ||| | |||| |||||||||||||||||| ||| |||||| ||| ||| || ||| | || |||||||||||| |
|
|
| T |
13786999 |
tacctgatgactttcatcaaggaaatctagttgtttttgaattaacacacagcaatattaaacacgtatggaacgaaaccaaggtataa |
13787087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 27 - 277
Target Start/End: Original strand, 20811700 - 20811949
Alignment:
| Q |
27 |
ggtactgattctttgcaggagatgcaaaagctgagacttttaaaacttgatggtgttcaccttatgggagaatatgggttaatttccaaacaactgagat |
126 |
Q |
| |
|
|||||| || |||| ||||||||| |||| ||||| ||||||||||||||||||||| |||| || ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
20811700 |
ggtactaatgctttccaggagatgaaaaaactgaggcttttaaaacttgatggtgttgacctcatcggagattatggtttaatttccaaacaactgagat |
20811799 |
T |
|
| Q |
127 |
gggttgattggcaacgatctgctttcaaatttataccgaatgactttgatctggaaaatttagttgtttttgaattaaaacatagcaatcttagacaagt |
226 |
Q |
| |
|
||||||||||||||||| || | ||||||| |||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
20811800 |
gggttgattggcaacgacctaccttcaaatgtataccagatgactctgatctgggaaatctagttgtttttgaattaaaacatagcaatattggacaagt |
20811899 |
T |
|
| Q |
227 |
ttggcaggagaccaaggtataacaacattttctctcgaaactcaaaggttg |
277 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| | |||||||||||||| |
|
|
| T |
20811900 |
ttggcaggagcccaaggtataataacattttct-tttaaactcaaaggttg |
20811949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 27 - 277
Target Start/End: Original strand, 20838055 - 20838304
Alignment:
| Q |
27 |
ggtactgattctttgcaggagatgcaaaagctgagacttttaaaacttgatggtgttcaccttatgggagaatatgggttaatttccaaacaactgagat |
126 |
Q |
| |
|
|||||| || |||| ||||| ||| |||| ||||| ||||||||||||||||||||| |||| || ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
20838055 |
ggtactaatgctttccaggacatgaaaaaactgaggcttttaaaacttgatggtgttgacctcatcggagattatggtttaatttccaaacaactgagat |
20838154 |
T |
|
| Q |
127 |
gggttgattggcaacgatctgctttcaaatttataccgaatgactttgatctggaaaatttagttgtttttgaattaaaacatagcaatcttagacaagt |
226 |
Q |
| |
|
||||||||||||||||| || | ||||||| |||||| |||||| |||||| | |||| ||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
20838155 |
gggttgattggcaacgacctaccttcaaatgtataccagatgactctgatctaggaaatctagttgtttttgaattaaaacatagcaatattggacaagt |
20838254 |
T |
|
| Q |
227 |
ttggcaggagaccaaggtataacaacattttctctcgaaactcaaaggttg |
277 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| | |||||||||||||| |
|
|
| T |
20838255 |
ttggcaggagcccaaggtataataacattttct-tttaaactcaaaggttg |
20838304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 259
Target Start/End: Original strand, 30417251 - 30417473
Alignment:
| Q |
37 |
ctttgcaggagatgcaaaagctgagacttttaaaacttgatggtgttcaccttatgggagaatatgggttaatttccaaacaactgagatgggttgattg |
136 |
Q |
| |
|
|||| ||||||||| | || |||||||||||| |||||||| ||||| |||| | ||||| | |||||| |||||||||||||||||||||| |||| |
|
|
| T |
30417251 |
cttttcaggagatgaagaaactgagacttttacaacttgattgtgttgacctcactggagattttgggtttctttccaaacaactgagatgggtcaattg |
30417350 |
T |
|
| Q |
137 |
gcaacgatctgctttcaaatttataccgaatgactttgatctggaaaatttagttgtttttgaattaaaacatagcaatcttagacaagtttggcaggag |
236 |
Q |
| |
|
|| || |||| | ||||| | | || || ||||| ||| | |||| |||||||||||||||||||| |||||| ||| |||||||||| ||||| |
|
|
| T |
30417351 |
gcgacaatctaccttcaaccatgttcccaacaacttttatcaaggaaatctagttgtttttgaattaaaatatagcatggttaaacaagtttggaaggag |
30417450 |
T |
|
| Q |
237 |
accaaggtataacaacattttct |
259 |
Q |
| |
|
||| ||||||| |||||||||| |
|
|
| T |
30417451 |
accccggtataataacattttct |
30417473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 6 - 257
Target Start/End: Complemental strand, 8372456 - 8372205
Alignment:
| Q |
6 |
agaacaggcagaattatatttggtactgattctttgcaggagatgcaaaagctgagacttttaaaacttgatggtgttcaccttatgggagaatatgggt |
105 |
Q |
| |
|
||||||||||||||| ||||| ||| || |||| ||||||||| |||| ||||| ||||||||||||||||||||| |||| || ||||| ||||||| |
|
|
| T |
8372456 |
agaacaggcagaatttgctttggcactaatgctttccaggagatggaaaaactgaggcttttaaaacttgatggtgttgacctcatcggagattatgggt |
8372357 |
T |
|
| Q |
106 |
taatttccaaacaactgagatgggttgattggcaacgatctgctttcaaatttataccgaatgactttgatctggaaaatttagttgtttttgaattaaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| | |||| ||||||||| ||||| ||||||| || |||| ||||||||||||||||||| |
|
|
| T |
8372356 |
taatttccaaacaactgagatgggttgattggcaaaggtctaccttcacatttatacccaatgattttgatcaggcaaatctagttgtttttgaattaaa |
8372257 |
T |
|
| Q |
206 |
acatagcaatcttagacaagtttggcaggagaccaaggtataacaacatttt |
257 |
Q |
| |
|
| |||||||| ||| ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
8372256 |
atatagcaatgttaaacaagtttggcaggacaccaaggtataataacatttt |
8372205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 257
Target Start/End: Complemental strand, 6906502 - 6906354
Alignment:
| Q |
109 |
tttccaaacaactgagatgggttgattggcaacgatctgctttcaaatttataccgaatgactttgatctggaaaatttagttgtttttgaattaaaaca |
208 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| | ||||| | ||||||||| |||||| ||| | |||| |||||||||| ||||||||| |
|
|
| T |
6906502 |
tttccaaacagctgagatgggtcaattggcaacgatctaccttcaactgtataccgaaagacttttatcaaggaaatctagttgttttagaattaaaatt |
6906403 |
T |
|
| Q |
209 |
tagcaatcttagacaagtttggcaggagaccaaggtataacaacatttt |
257 |
Q |
| |
|
||||||| ||| |||||||||| |||| |||||||||| | |||||||| |
|
|
| T |
6906402 |
tagcaatgttaaacaagtttggaaggaaaccaaggtatgataacatttt |
6906354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 230
Target Start/End: Complemental strand, 32411809 - 32411639
Alignment:
| Q |
60 |
agacttttaaaacttgatggtgttcaccttatgggagaatatgggttaatttccaaacaactgagatgggttgattggcaacgatctgctttcaaattta |
159 |
Q |
| |
|
||||||||| |||||||| ||||| |||| || ||||| |||| | ||||||| |||||||||||||| | |||||| ||| | ||||||| || |
|
|
| T |
32411809 |
agacttttacaacttgattgtgttaacctcattggagactatgattgtttttccaatcaactgagatgggtcaaatggcaaggatttactttcaacaata |
32411710 |
T |
|
| Q |
160 |
taccgaatgactttgatctggaaaatttagttgtttttgaattaaaacatagcaatcttagacaagtttgg |
230 |
Q |
| |
|
||||| |||||||| ||| || |||| | |||| | | || |||||||| |||||| |||||||||||||| |
|
|
| T |
32411709 |
taccggatgacttttatcagggaaatcttgttgctatggacttaaaacacagcaatattagacaagtttgg |
32411639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 109 - 257
Target Start/End: Complemental strand, 6842 - 6694
Alignment:
| Q |
109 |
tttccaaacaactgagatgggttgattggcaacgatctgctttcaaatttataccgaatgactttgatctggaaaatttagttgtttttgaattaaaaca |
208 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| | |||| | |||||| ||||||||| ||| | |||| |||||||||| ||||||||| |
|
|
| T |
6842 |
tttccaaacagctgagatgggtcaattggcaacgatctaccttcagctgtataccaaatgactttcatcaaggaaatctagttgttttagaattaaaatt |
6743 |
T |
|
| Q |
209 |
tagcaatcttagacaagtttggcaggagaccaaggtataacaacatttt |
257 |
Q |
| |
|
||||||| ||| |||||||||| |||| |||||||||| | |||||||| |
|
|
| T |
6742 |
tagcaatgttaaacaagtttggaaggaaaccaaggtatgataacatttt |
6694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 14767698 - 14767478
Alignment:
| Q |
28 |
gtactgattctttgcaggagatgcaaaagctgagacttttaaaacttgatggtgttcaccttatgggagaatatgggttaatttccaaacaactgagatg |
127 |
Q |
| |
|
||||| || |||| ||||| ||| | || |||||||||||| ||||||| ||||| |||| || ||||| | |||| ||||||| || ||| | || |
|
|
| T |
14767698 |
gtactaatgctttccaggaaatgaataaactgagacttttacaacttgaccgtgttgacctcattggagattttggggatctttccaaccacctgtgttg |
14767599 |
T |
|
| Q |
128 |
ggttgattggcaacgatctgctttcaaatttataccgaatgactttgatctggaaaatttagttgtttttgaattaaaacatagcaatcttagacaagtt |
227 |
Q |
| |
|
||||||||||||||||| | | ||||||| |||||| |||||||| ||| ||||||| |||||| |||||| ||||| |||||||| | ||||||||| |
|
|
| T |
14767598 |
ggttgattggcaacgattttccttcaaatgtatacctgatgacttttatcaggaaaatctagttgcttttgagctaaaatatagcaatgtcagacaagtt |
14767499 |
T |
|
| Q |
228 |
tggcaggagaccaaggtataa |
248 |
Q |
| |
|
||| |||| ||| ||||||| |
|
|
| T |
14767498 |
tggaaggaagccatggtataa |
14767478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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