View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_169 (Length: 275)
Name: NF8912A_low_169
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_169 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0226 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 101 - 275
Target Start/End: Original strand, 18674920 - 18675094
Alignment:
| Q |
101 |
atccaaatgaattaattgctataactcctcatgcaagcagatacccagcttgctccttaacttctcaaattgtttgacatccaaaaccttggtaaaaatg |
200 |
Q |
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| T |
18674920 |
atccatatgaattaattgctagaactccttatgtaagcagatacccaacttgctccataacttctcaaattgttttacatccaaagccttggtaaaaatg |
18675019 |
T |
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| Q |
201 |
tcagccaattgctcttcagtagacacatgttcaagagtcgcaatcttttcttcaacaagatccctcatgaaatga |
275 |
Q |
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| T |
18675020 |
tcagccaattgttcttcagtagatacatgttcaagagtcacaatcttttcttcaacaagatccctgatgtaatga |
18675094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 18674850 - 18674914
Alignment:
| Q |
7 |
acaacaatgatatcttactccccctttttagccataaaacgtgccaaaataagaacagagagaga |
71 |
Q |
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| T |
18674850 |
acaacaatgatatcttactccccctttttatccataaaatgtgccaaaataagaacagagagaga |
18674914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 17281494 - 17281535
Alignment:
| Q |
21 |
ttactccccctttttagccataaaacgtgccaaaataagaac |
62 |
Q |
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| T |
17281494 |
ttactccccctttttagccataaaatgtgctagaataagaac |
17281535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 125 - 271
Target Start/End: Original strand, 2077993 - 2078139
Alignment:
| Q |
125 |
ctcctcatgcaagcagatacccagcttgctccttaacttctcaaattgtttgacatccaaaaccttggtaaaaatgtcagccaattgctcttcagtagac |
224 |
Q |
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| T |
2077993 |
ctccttatgcaagcaaacacccaacttgctccttagattctcaaattgtttgacatctaaagctttggtgaaaatgtcagccaattgttcttcagtggct |
2078092 |
T |
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| Q |
225 |
acatgttcaagagtcgcaatcttttcttcaacaagatccctcatgaa |
271 |
Q |
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| T |
2078093 |
acatgctctagagttacaaccttatcttcaaccagatccctgatgaa |
2078139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 42787263 - 42787367
Alignment:
| Q |
118 |
gctataactcctcatgcaagcagatacccagcttgctccttaacttctcaaattgtttgacatccaaaaccttggtaaaaatgtcagccaattgctcttc |
217 |
Q |
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|||||| ||||||||| | ||||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||||||||||| ||||| |
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| T |
42787263 |
gctatagctcctcatgtagacagatacccagcttgctccataatacctcaaattgtttgacatccaaagtttttgtaaaaatgtcagccaattgttcttc |
42787362 |
T |
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| Q |
218 |
agtag |
222 |
Q |
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||||| |
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| T |
42787363 |
agtag |
42787367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 14976998 - 14977060
Alignment:
| Q |
21 |
ttactccccctttttagccataaaacgtgccaaaataagaaca-gagagagaataggaaccaa |
82 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||| |||||||| || ||||||| |
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| T |
14976998 |
ttactccccctttttagccacaaaatgtgccaaaataagaacaggagagagactatgaaccaa |
14977060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 15406474 - 15406536
Alignment:
| Q |
21 |
ttactccccctttttagccataaaacgtgccaaaataagaaca-gagagagaataggaaccaa |
82 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||| |||||||| || ||||||| |
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| T |
15406474 |
ttactccccctttttagccacaaaatgtgccaaaataagaacaggagagagactatgaaccaa |
15406536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 42787214 - 42787255
Alignment:
| Q |
21 |
ttactccccctttttagccataaaacgtgccaaaataagaac |
62 |
Q |
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|||||||||||||||||||| |||| ||||||||||| |||| |
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| T |
42787214 |
ttactccccctttttagccagaaaatgtgccaaaataggaac |
42787255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 11323829 - 11323773
Alignment:
| Q |
7 |
acaacaatgatatcttactccccctttttagccataaaacgtgccaaaataagaaca |
63 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
11323829 |
acaacaatgatatcttactccccctttttagccacaaaatgtgccaaaataagaaca |
11323773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 275
Target Start/End: Complemental strand, 15914 - 15764
Alignment:
| Q |
125 |
ctcctcatgcaagcagatacccagcttgctccttaacttctcaaattgtttgacatccaaaaccttggtaaaaatgtcagccaattgctcttcagtagac |
224 |
Q |
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||||||||||| || || |||| ||||| |||||| || ||||||||||| |||| || ||||||| |||||||| |||| |||||| || || |
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| T |
15914 |
ctcctcatgcagacaaattcccaacttgccccttaatttttcaaattgtttagcatctaaggccttggtgaaaatgtctgccagttgctcctctgtttca |
15815 |
T |
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| Q |
225 |
acatgttcaagagtcgcaatcttttcttcaacaagatccctcatgaaatga |
275 |
Q |
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||||||||||| ||| ||| |||||||||||||||||| || ||||||||| |
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| T |
15814 |
acatgttcaagtgtcacaaccttttcttcaacaagatctctgatgaaatga |
15764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 275
Target Start/End: Complemental strand, 25308 - 25158
Alignment:
| Q |
125 |
ctcctcatgcaagcagatacccagcttgctccttaacttctcaaattgtttgacatccaaaaccttggtaaaaatgtcagccaattgctcttcagtagac |
224 |
Q |
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||||||||||| || || |||| ||||| |||||| || ||||||||||| |||| || ||||||| |||||||| |||| |||||| || || |
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| T |
25308 |
ctcctcatgcagacaaattcccaacttgccccttaatttttcaaattgtttagcatctaaggccttggtgaaaatgtctgccagttgctcctctgtttca |
25209 |
T |
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| Q |
225 |
acatgttcaagagtcgcaatcttttcttcaacaagatccctcatgaaatga |
275 |
Q |
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||||||||||| ||| ||| |||||||||||||||||| || ||||||||| |
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| T |
25208 |
acatgttcaagtgtcacaaccttttcttcaacaagatctctgatgaaatga |
25158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 275
Target Start/End: Complemental strand, 20198789 - 20198639
Alignment:
| Q |
125 |
ctcctcatgcaagcagatacccagcttgctccttaacttctcaaattgtttgacatccaaaaccttggtaaaaatgtcagccaattgctcttcagtagac |
224 |
Q |
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||||||||||||| | || |||| ||||| ||||| || ||||||||||| |||| || ||||||| |||||||| |||| ||||||||| || |
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| T |
20198789 |
ctcctcatgcaagaaaattcccaacttgccccttagtttttcaaattgtttagcatctaaggccttggtgaaaatgtctgccagttgctcttctgtgtca |
20198690 |
T |
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| Q |
225 |
acatgttcaagagtcgcaatcttttcttcaacaagatccctcatgaaatga |
275 |
Q |
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||||| ||||| ||| ||| |||||||||||||||||| || ||||||||| |
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| T |
20198689 |
acatgctcaagtgtcacaaccttttcttcaacaagatctctgatgaaatga |
20198639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 275
Target Start/End: Complemental strand, 15570515 - 15570405
Alignment:
| Q |
165 |
tcaaattgtttgacatccaaaaccttggtaaaaatgtcagccaattgctcttcagtagacacatgttcaagagtcgcaatcttttcttcaacaagatccc |
264 |
Q |
| |
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||||||||||| |||| || ||||||| |||||||| |||| |||||| || || ||||| ||||| ||| ||| |||||||||||||||||| | |
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| T |
15570515 |
tcaaattgtttagcatctaatgccttggtgaaaatgtctgccagttgctcctctgtgtcaacatgctcaagtgtcacaaccttttcttcaacaagatctc |
15570416 |
T |
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| Q |
265 |
tcatgaaatga |
275 |
Q |
| |
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| ||||||||| |
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| T |
15570415 |
tgatgaaatga |
15570405 |
T |
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