View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_17 (Length: 440)
Name: NF8912A_low_17
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 41559359 - 41558932
Alignment:
| Q |
12 |
gaattaagacagcaataatgtcagtgcaagaaaaacagaaaaaagtctaccatactaccatgtatgaagtaccaacatatacttgatggagacaaaccta |
111 |
Q |
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| T |
41559359 |
gaattaagacagcaataatgtcaatgcaagaaaaacagaaaaa-gtctaccatactaccatgtatgaagtaccaacatatacttgatggagacaaaccta |
41559261 |
T |
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| Q |
112 |
ttcgtccactataatgcttggaacacatttttgagaaaactttcttccaattaggcctagcaaaatgtgtccgtacctgataattagaaattcaaaagaa |
211 |
Q |
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| T |
41559260 |
ttcgtccactatagtgcttggaacacatttttgagaaaactttcttccaattaggcctagcaaaatgcgtccgtacctgataattagaaattcaaaagaa |
41559161 |
T |
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| Q |
212 |
gctattttaatttactcactccggacttagaaattaaaagagtatcaagggtagggtactcaaatgcatcgtatataacaaaaatagaatgcttaccctg |
311 |
Q |
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| T |
41559160 |
gctattttaatttactcactccggacttagaaattaaaagagtatcaagggtagggtactcaaatgcatcgtatataacaaaaatagaatgcttaccctg |
41559061 |
T |
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| Q |
312 |
gttccagaaacaatatcaactccatttttggcatggttaagtgcttgaaccatggtgataagggcggatctagcatctccttcctcgtatacgctagtta |
411 |
Q |
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| T |
41559060 |
gttccagaaacaatatcaactccatttttggcatggttaagtgcttgaaccatggtgataagggcggatctagcatctccttcctcgtatacgctagtta |
41558961 |
T |
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| Q |
412 |
agtagttgtgcatctcaatgacaccctga |
440 |
Q |
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| T |
41558960 |
agtagttgtgcatctcaatgacaccctga |
41558932 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 394
Target Start/End: Original strand, 46560306 - 46560382
Alignment:
| Q |
318 |
gaaacaatatcaactccatttttggcatggttaagtgcttgaaccatggtgataagggcggatctagcatctccttc |
394 |
Q |
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| T |
46560306 |
gaaacaatatccacaccacttttggcatgatgaagtgattgaagcatagtgatcaaagctgatctagcatctccttc |
46560382 |
T |
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