View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_171 (Length: 273)
Name: NF8912A_low_171
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_171 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 32910271 - 32910531
Alignment:
| Q |
9 |
tggagttcctaattacactaatcaccactgttctactcttgttaatgcctgcaatcacttcctcacaatatttaggaaacaacctactcactaatcgaaa |
108 |
Q |
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| T |
32910271 |
tggagttcctaattacactaatcaccactgttctactcttgttaatgcctgcaatcacttcctcacaatatttaggaaacaacctactcactaatcgaaa |
32910370 |
T |
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| Q |
109 |
gattttccaacaacaagaaacaatttcctcttatgctgtcgagtttggtgttggtagcactggtagccgtattcatgtttatcattttgatcagaactta |
208 |
Q |
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| T |
32910371 |
gattttccaaaaacaagaaacaatttcctcttatgctgtcgtgtttgatgctggtagcactggtagccgtattcatgtttaccattttgatcagaactta |
32910470 |
T |
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| Q |
209 |
gatcttcttcatattggcaaagatgttgagttttttaataaggtgacaataacattttatg |
269 |
Q |
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| T |
32910471 |
gatcttcttcatattggcaaagatgttgagttttttaataaggtgacaataacattttatg |
32910531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 32932123 - 32932368
Alignment:
| Q |
9 |
tggagttcctaattacactaatcaccactgttctactcttgttaatgcctgcaatcacttcctcacaatatttaggaaacaacctactcactaatcgaaa |
108 |
Q |
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| T |
32932123 |
tggagttcctaattacactcattaccacttttttactcttgttaatgcctgcaatcacttcctcccaatatttaggaaacaacctactcactaatcgaaa |
32932222 |
T |
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| Q |
109 |
gattttccaacaacaagaaacaatttcctcttatgctgtcgagtttggtgttggtagcactggtagccgtattcatgtttatcattttgatcagaactta |
208 |
Q |
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| T |
32932223 |
gattttccaaaaacaagaaaccttaacatcttacgctgtcatatttgatgctggtagcactggtactcgtgtccatgtttaccattttgaccagaactta |
32932322 |
T |
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| Q |
209 |
gatcttcttcatattggcaaagatgttgagttttttaataaggtga |
254 |
Q |
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| T |
32932323 |
gatcttcttcacattggcaatgatattgagtttgttgacaaggtga |
32932368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 93 - 263
Target Start/End: Original strand, 32921744 - 32921914
Alignment:
| Q |
93 |
tactcactaatcgaaagattttccaacaacaagaaacaatttcctcttatgctgtcgagtttggtgttggtagcactggtagccgtattcatgtttatca |
192 |
Q |
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| T |
32921744 |
tactcactaaccgtaagattttcccaaaacaagaaccaatttcctcttatgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttacca |
32921843 |
T |
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| Q |
193 |
ttttgatcagaacttagatcttcttcatattggcaaagatgttgagttttttaataaggtgacaataacat |
263 |
Q |
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| T |
32921844 |
ttttgatcaaaacttaaatcttcttcatgttggtaaagatgttgagttttataataaggtgacaataacat |
32921914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 252
Target Start/End: Original strand, 32940381 - 32940594
Alignment:
| Q |
39 |
ttctactcttgttaatgcctgcaatcacttcctcacaatatttaggaaacaacctactcactaatcgaaagat-tttccaacaacaagaaacaatttcct |
137 |
Q |
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| T |
32940381 |
ttctactcttcttgatgcctacaatctcttcctcccaatatcttggaaacaatatactcaccaatcgtaaaatatttccaa-aacaagaaactctaacct |
32940479 |
T |
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| Q |
138 |
cttatgctgtcgagtttggtgttggtagcactggtagccgtattcatgtttatcattttgatcagaacttagatcttcttcatattggcaaagatgttga |
237 |
Q |
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| T |
32940480 |
cgtacgctgtcgtctttgatgctggtagcaccggtagccgtgttcatgtctaccattttgatcagaacttagatcttcttcacattggcaacgatgttga |
32940579 |
T |
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| Q |
238 |
gttttttaataaggt |
252 |
Q |
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| T |
32940580 |
gttttataataaggt |
32940594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 32897473 - 32897550
Alignment:
| Q |
160 |
tggtagcactggtagccgtattcatgtttatcattttgatcagaacttagatcttcttcatattggcaaagatgttga |
237 |
Q |
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| T |
32897473 |
tggtagctctggtagccgtgttcatgtttttcattttgatcagaatttagatcttgttcacattggcaaagatcttga |
32897550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 93 - 263
Target Start/End: Original strand, 11822264 - 11822434
Alignment:
| Q |
93 |
tactcactaatcgaaagattttccaacaacaagaaacaatttcctcttatgctgtcgagtttggtgttggtagcactggtagccgtattcatgtttatca |
192 |
Q |
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|||||||||| || |||||||||| | |||||||||||||||||||||| ||||| | ||||| || |||||||||||| |||||| | |||||||| || |
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| T |
11822264 |
tactcactaaccgtaagattttcccaaaacaagaaacaatttcctcttacgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttacca |
11822363 |
T |
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| Q |
193 |
ttttgatcagaacttagatcttcttcatattggcaaagatgttgagttttttaataaggtgacaataacat |
263 |
Q |
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||||||||| |||||| ||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |
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| T |
11822364 |
ttttgatcaaaacttaaatcttcttcatgttggtaaagatgttgagttttataataaggtgacaataacat |
11822434 |
T |
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