View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_187 (Length: 265)
Name: NF8912A_low_187
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_187 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 24146 - 24359
Alignment:
| Q |
16 |
atcaccacacaaacaacaattcattccgaattcgaaacctctgataaccgcatacaagaaaacaggattcgagaagaacagaaagtaaattcatcaaaat |
115 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
24146 |
atcaccgcacaaacaacaattcattccgaatttgaaacctctaacaaccgcatacaagagaacaggattcgagaagaacagaaagcaaattcatcaaaat |
24245 |
T |
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| Q |
116 |
ccaaggtatccgtaactgaaccgaagcagaaacgcgaaggaaggagaagtgaacggagtcgaaacaacataaccaaggggttaaagctcagatccgcttc |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24246 |
ccaaggtatccgtaactgaaccgaggcagaaacgcgaaggaaggagaagtgaacggagtcgaaacaacataaccaaggggttaaagctcagatccgcttc |
24345 |
T |
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| Q |
216 |
tcaaggtaaaaaga |
229 |
Q |
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|||||||||||| |
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| T |
24346 |
aaaaggtaaaaaga |
24359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 38411434 - 38411647
Alignment:
| Q |
16 |
atcaccacacaaacaacaattcattccgaattcgaaacctctgataaccgcatacaagaaaacaggattcgagaagaacagaaagtaaattcatcaaaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38411434 |
atcaccacacaaacaacaattcattccgaattcgaaacctctgataactgcatacaagagaacaggattcgagaagaacagaaagtaaattcatcaaaat |
38411533 |
T |
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| Q |
116 |
ccaaggtatccgtaactgaaccgaagcagaaacgcgaaggaaggagaagtgaacggagtcgaaacaacataaccaaggggttaaagctcagatccgcttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
38411534 |
ccaaggtatccgtaactgaaccgaagcagaaacgtgaagaaaggagaagtgaatggagtcgaaacaacataacaaaggggttaaagctcagatcctcttc |
38411633 |
T |
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| Q |
216 |
tcaaggtaaaaaga |
229 |
Q |
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|||||||||||| |
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| T |
38411634 |
aaaaggtaaaaaga |
38411647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 38417078 - 38417272
Alignment:
| Q |
16 |
atcaccacacaaacaacaattcattccgaattcgaaacctctgataaccgcatacaagaaaacaggattcgagaagaacagaaagtaaattcatcaaaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38417078 |
atcaccacacaaacaacaattcattccgaattcgaaacctctgataactgcatacaagagaacaggattcgagaagaacagaaagtaaattcatcaaaat |
38417177 |
T |
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| Q |
116 |
ccaaggtatccgtaactgaaccgaagcagaaacgcgaaggaaggagaagtgaacggagtcgaaacaacataaccaaggggttaaagctcagatcc |
210 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38417178 |
ccaaggtatccgtaactgaaccgaagcagaaacgtgaagaaaggagaagtgaatggagtcgaaacaacataacaaaggggttaaagctcagatcc |
38417272 |
T |
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