View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_189 (Length: 265)

Name: NF8912A_low_189
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_189
NF8912A_low_189
[»] chr3 (27 HSPs)
chr3 (17-246)||(41985620-41985852)
chr3 (17-244)||(41980846-41981073)
chr3 (25-127)||(9494822-9494924)
chr3 (25-246)||(9448314-9448535)
chr3 (25-141)||(9343845-9343961)
chr3 (33-141)||(9329844-9329952)
chr3 (33-141)||(9336548-9336656)
chr3 (25-141)||(9407366-9407482)
chr3 (25-138)||(9655360-9655473)
chr3 (25-138)||(9425573-9425686)
chr3 (25-138)||(9646367-9646480)
chr3 (25-141)||(9617463-9617579)
chr3 (33-141)||(9695616-9695724)
chr3 (33-126)||(9340679-9340772)
chr3 (39-141)||(9416587-9416689)
chr3 (25-141)||(9397785-9397903)
chr3 (37-127)||(9352913-9353003)
chr3 (33-126)||(9347995-9348088)
chr3 (33-126)||(9369649-9369742)
chr3 (26-147)||(9756381-9756502)
chr3 (25-141)||(9432896-9433012)
chr3 (25-133)||(9626488-9626596)
chr3 (39-107)||(9441815-9441883)
chr3 (33-85)||(9614009-9614061)
chr3 (93-141)||(9686751-9686799)
chr3 (29-88)||(9377090-9377149)
chr3 (26-55)||(16011768-16011797)
[»] chr8 (2 HSPs)
chr8 (81-246)||(13170579-13170744)
chr8 (23-246)||(44688680-44688903)
[»] chr1 (8 HSPs)
chr1 (17-246)||(18991196-18991422)
chr1 (25-123)||(235213-235311)
chr1 (25-92)||(4439860-4439927)
chr1 (22-136)||(4428628-4428742)
chr1 (25-118)||(8814385-8814478)
chr1 (25-123)||(251412-251510)
chr1 (33-118)||(231589-231674)
chr1 (25-116)||(246867-246958)
[»] chr2 (1 HSPs)
chr2 (25-138)||(20694304-20694417)
[»] chr6 (7 HSPs)
chr6 (25-141)||(7041496-7041612)
chr6 (25-123)||(7046839-7046937)
chr6 (62-123)||(7025793-7025854)
chr6 (62-123)||(7029850-7029911)
chr6 (62-123)||(9170854-9170915)
chr6 (62-121)||(9159515-9159574)
chr6 (62-123)||(7012857-7012918)
[»] chr7 (2 HSPs)
chr7 (22-128)||(3695687-3695792)
chr7 (33-141)||(450111-450219)
[»] chr5 (1 HSPs)
chr5 (25-127)||(18571108-18571213)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 41985620 - 41985852
Alignment:
Q  17 gacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985620 gacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 41985719  T
Q  117 ttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaac---tcacgct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||| ||    
T  41985720 ttctcatcaagtctgaacacatcaagctttaaaccatcttcaccggggaaaccaaaacaatgagagtcatatatgtctactagcaacaactgatcaccct 41985819  T
Q  214 cactctctaccaggaatttcatgtcccctccat 246  Q
    |||||||||||||||||||||||||||||||||    
T  41985820 cactctctaccaggaatttcatgtcccctccat 41985852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 41980846 - 41981073
Alignment:
Q  17 gacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 116  Q
    |||| |||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  41980846 gacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctct 41980945  T
Q  117 ttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcac 216  Q
    |||| | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||||||||| ||| ||||| |||||||| || |||| |||||    
T  41980946 ttcttagcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaatgagagtgataaatgtccactagcaataattcaccctcac 41981045  T
Q  217 tctctaccaggaatttcatgtcccctcc 244  Q
    ||||||||||||||||||  ||||||||    
T  41981046 tctctaccaggaatttcacatcccctcc 41981073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 9494924 - 9494822
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||| || |||||| || |||||||||||||    
T  9494924 acaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactcatcaaattcacccatctcatctccttctcatc 9494825  T
Q  125 aag 127  Q
    |||    
T  9494824 aag 9494822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 9448314 - 9448535
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 124  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| | |  ||||| ||||||||||||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  125 aagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctacc 224  Q
    |||  | |||||||||| | ||| | ||||   ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || ||     
T  9448414 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaact 9448513  T
Q  225 aggaatttcatgtcccctccat 246  Q
    | |||||| |||||||||||||    
T  9448514 aagaattttatgtcccctccat 9448535  T

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Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 9343845 - 9343961
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 124  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |  ||||| ||||| ||||||||| |||||||    
T  9343845 acaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatc 9343944  T
Q  125 aagtctgaacacatcaa 141  Q
    |||  | ||||||||||    
T  9343945 aagcttaaacacatcaa 9343961  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 9329844 - 9329952
Alignment:
Q  33 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 132  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||| |||||| ||||||||||||||||  | ||||| ||||||||||| || |    
T  9329844 gaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaa 9329943  T
Q  133 acacatcaa 141  Q
    |||||||||    
T  9329944 acacatcaa 9329952  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 9336548 - 9336656
Alignment:
Q  33 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| ||| || |||||||||  | ||||| ||||||||||| || |    
T  9336548 gaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaa 9336647  T
Q  133 acacatcaa 141  Q
    |||||||||    
T  9336648 acacatcaa 9336656  T

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Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 9407366 - 9407482
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 124  Q
    ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||||||||||||||  |||||| |||||| | || | |||||| ||    
T  9407366 acaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccatcttttattcttctcgtc 9407465  T
Q  125 aagtctgaacacatcaa 141  Q
    |||||| ||||||||||    
T  9407466 aagtctaaacacatcaa 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 9655473 - 9655360
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 124  Q
    ||||||||||||| || ||||||||||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| ||||||||||||||||||||||     
T  9655473 acaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatg 9655374  T
Q  125 aagtctgaacacat 138  Q
    || |||||| ||||    
T  9655373 aaatctgaaaacat 9655360  T

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Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 9425573 - 9425686
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 124  Q
    ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||| || |||||||  |||||| |||||||| || | |||||| ||    
T  9425573 acaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctattccttaaactcatcaacttcacccattttttattcttctcgtc 9425672  T
Q  125 aagtctgaacacat 138  Q
    |||||| |||||||    
T  9425673 aagtctaaacacat 9425686  T

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Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 9646480 - 9646367
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 124  Q
    ||||||||||||| || ||||||||||||||||| |  || || |||||||| |||||||||||| ||  |||||| ||||||||||||||||||||||     
T  9646480 acaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatg 9646381  T
Q  125 aagtctgaacacat 138  Q
    || |||||| ||||    
T  9646380 aaatctgaaaacat 9646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 9617579 - 9617463
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 124  Q
    ||||||| ||||||||||||||||| |||||||||||| | | ||||||||| |||||||||||| |   |||||| |||||||||||||| |||||||     
T  9617579 acaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatcccctaaatttttcaacttcacccatttcttctctttctcatg 9617480  T
Q  125 aagtctgaacacatcaa 141  Q
    ||  |||||||| ||||    
T  9617479 aaacctgaacacttcaa 9617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 9695724 - 9695616
Alignment:
Q  33 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 132  Q
    |||||||| ||||| ||||||||  | | |||||| |||||||| |||||||||||| | | |||||||||||| |||||||||||||||||||| ||||    
T  9695724 gaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctga 9695625  T
Q  133 acacatcaa 141  Q
    | |||||||    
T  9695624 atacatcaa 9695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 9340679 - 9340772
Alignment:
Q  33 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 126  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||||||||||||    
T  9340679 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

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Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 9416587 - 9416689
Alignment:
Q  39 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 138  Q
    ||||||||||| ||||||  |||| | |||||||| || |||||||||||||||| |||||| |||||||| || | |||||| ||||| | ||||||||    
T  9416587 gaagcagaaaatgaacatttattcacgaagaacaacaccctatcccctaaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacat 9416686  T
Q  139 caa 141  Q
    |||    
T  9416687 caa 9416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 9397785 - 9397903
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca--tttcttctccttctca 122  Q
    |||||||| |||| ||||| ||||| |||||||||||| | |||||||| || |||||||||||||||  |||||| || ||  ||| || | ||||||     
T  9397785 acaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatcccctaaactcatcaacttcacgcattttttttatacttctcg 9397884  T
Q  123 tcaagtctgaacacatcaa 141  Q
    |||||||| ||||||||||    
T  9397885 tcaagtctaaacacatcaa 9397903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 9352913 - 9353003
Alignment:
Q  37 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 127  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||| |||||||  |   |||||| ||||| ||||||||| ||||||||||    
T  9352913 cagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaattttttcaacttcacccacttcttctccatctcatcaag 9353003  T

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Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 9347995 - 9348088
Alignment:
Q  33 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 126  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |  |||||| ||||| |||||||||||||||||||    
T  9347995 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 9369649 - 9369742
Alignment:
Q  33 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 126  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |  |||||| ||||| |||||||||||||||||||    
T  9369649 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 9756381 - 9756502
Alignment:
Q  26 caaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatca 125  Q
    ||||||||| ||||| ||||| || ||||| || | ||| || |||||||| |||||||| ||| || |||||||||||||  | ||||| |||||||||    
T  9756381 caaatccgatgcagatgcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatca 9756480  T
Q  126 agtctgaacacatcaagcttta 147  Q
    || ||  ||||||||| |||||    
T  9756481 agcctatacacatcaatcttta 9756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 9432896 - 9433012
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 124  Q
    |||||||||| || ||||||||||| ||| || ||  ||| | ||||||||| ||||| |||||| ||   | ||| ||||| ||| |||||||||||||    
T  9432896 acaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaaccctatctcctaaattcttgatcttcacccacttcctctccttctcatc 9432995  T
Q  125 aagtctgaacacatcaa 141  Q
    ||||||||| |||||||    
T  9432996 aagtctgaaaacatcaa 9433012  T

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Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 9626596 - 9626488
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 124  Q
    ||||||||||||| || |||||||| ||   ||| || || || |||||||| |||||||||||| ||  ||| || ||||||||||||||||||||||     
T  9626596 acaaatccgaagctgatgcagaaaatgatgttcctttgccaaaaaacaaaaccctatcccctaaattcatcaaattcacccatttcttctccttctcatg 9626497  T
Q  125 aagtctgaa 133  Q
    || ||||||    
T  9626496 aaatctgaa 9626488  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 9441883 - 9441815
Alignment:
Q  39 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccat 107  Q
    ||||||||||| ||||||  |||| | ||||||||||| |||||||||||||||  |||||| ||||||    
T  9441883 gaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccat 9441815  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 9614061 - 9614009
Alignment:
Q  33 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 85  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||  |||||||    
T  9614061 gaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  93 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 141  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 9377090 - 9377149
Alignment:
Q  29 atccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaa 88  Q
    |||| |||||||||||| ||||||||||||| ||||||  |||||||  |||||||||||    
T  9377090 atcccaagcagaagcaggaaacgaacatccactccccacaaacaaaatcctatcccctaa 9377149  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 16011797 - 16011768
Alignment:
Q  26 caaatccgaagcagaagcagaaaacgaaca 55  Q
    ||||||||||||||||||||||||||||||    
T  16011797 caaatccgaagcagaagcagaaaacgaaca 16011768  T

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Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 81 - 246
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  81 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 180  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  181 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 246  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

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Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 44688903 - 44688680
Alignment:
Q  23 agacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctca 122  Q
    ||||||||||||||||| || |||||| ||| || |||||||||||||||||| ||||| |||||||||||  ||||| ||||||||||| | |||||||    
T  44688903 agacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaactttacccatttcttatgcttctca 44688804  T
Q  123 tcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctcta 222  Q
    |  ||  ||||||||||||||  || |||||||||||| ||||| ||||||| |||||||||||| ||||| ||||||||||||||||  ||||||||||    
T  44688803 ttgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccactagcaacaactcaccttcactctcta 44688704  T
Q  223 ccaggaatttcatgtcccctccat 246  Q
    |||||||||| |||||||||||||    
T  44688703 ccaggaattttatgtcccctccat 44688680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 18991196 - 18991422
Alignment:
Q  17 gacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 116  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||  | || |   ||||| |||||      
T  18991196 gacaacagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaagctcttcgacct---ccattccttcttt 18991292  T
Q  117 ttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcac 216  Q
     |||||| ||| || ||||| |  || |||| ||| | ||| |||||||| ||||||||||| |||||| | ||||| ||||||||||||||||  ||||    
T  18991293 ctctcattaagcctaaacaccttcagttttagacctttttcgccagggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcac 18991392  T
Q  217 tctctaccaggaatttcatgtcccctccat 246  Q
     |||||||| ||||||||| ||||||||||    
T  18991393 actctaccaagaatttcatatcccctccat 18991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 235213 - 235311
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 123  Q
    ||||||||||||||||||||||||||||||||     ||||||||| |||||||||||||||||| | |||||||| ||||| ||||||||||| ||||    
T  235213 acaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctccttttcat 235311  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 4439860 - 4439927
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 92  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  4439860 acaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctcccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 4428628 - 4428742
Alignment:
Q  22 cagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 121  Q
    ||||||| || |||||||| ||||||||| |||||||||||||||| |||||||| |||||||| ||||||| ||| || ||||||||   | |||||||    
T  4428628 cagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatcccccaaactcgtcaatttcacccatttacgcgccttctc 4428727  T
Q  122 atcaagtctgaacac 136  Q
    |||||| || |||||    
T  4428728 atcaagcctaaacac 4428742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 8814478 - 8814385
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 118  Q
    |||||||| |||||||||||||||| |||||      |||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||    
T  8814478 acaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttcacccacttcttctcctt 8814385  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 251510 - 251412
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 123  Q
    |||||||||| |||||| ||||||| ||||||     |||||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||| ||||    
T  251510 acaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttttcat 251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 231589 - 231674
Alignment:
Q  33 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 118  Q
    ||||||||||||||||| ||||||     |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231589 gaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 246867 - 246958
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 116  Q
    |||||||| |||||||||||||||| || ||      |||||||||||||||| |||| |||||| | |||||||| |||||||||||||||    
T  246867 acaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaacttcacccatttcttctcc 246958  T

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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 20694417 - 20694304
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| | |||  | ||||||||||||||||| |||||    
T  20694417 acaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgtcaaactcacccatttcttctccttttcatc 20694318  T
Q  125 aagtctgaacacat 138  Q
    ||| ||||||||||    
T  20694317 aagcctgaacacat 20694304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 7041496 - 7041612
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 124  Q
    ||||||||||||||||| |||| ||||||||| | |  |||||||||||||| |||||||||||||| | |||||| ||||| ||||||||||||||||     
T  7041496 acaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcatt 7041595  T
Q  125 aagtctgaacacatcaa 141  Q
    |||| | |||| |||||    
T  7041596 aagtttaaacaaatcaa 7041612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 7046839 - 7046937
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 123  Q
    ||||||| |||  |||||||||||||||||||    ||||||||||||||||| |||||||||||||||  ||||| ||||| ||||||||||||||||    
T  7046839 acaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcat 7046937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 7025793 - 7025854
Alignment:
Q  62 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 123  Q
    ||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||    
T  7025793 ccccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcat 7025854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  62 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 123  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 9170854 - 9170915
Alignment:
Q  62 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 123  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcat 9170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 9159574 - 9159515
Alignment:
Q  62 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 121  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctc 9159515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 7012857 - 7012918
Alignment:
Q  62 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 123  Q
    ||||||||||||||  ||||| |||||||| | |||||| ||||| ||||||||||||||||    
T  7012857 ccccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcat 7012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 3695687 - 3695792
Alignment:
Q  22 cagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 121  Q
    |||||||||||||||||  ||||||||| ||||||    | || |||||||||||||||||||||||||||  ||||||||  || ||||||| ||||||    
T  3695687 cagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctacaacttga-tcacttcttcttcttctc 3695785  T
Q  122 atcaagt 128  Q
    || ||||    
T  3695786 attaagt 3695792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 450219 - 450111
Alignment:
Q  33 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 132  Q
    ||||||||||||||||| ||| |   ||  || |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || |    
T  450219 gaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaa 450120  T
Q  133 acacatcaa 141  Q
    |||||||||    
T  450119 acacatcaa 450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 18571108 - 18571213
Alignment:
Q  25 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaa---aactctatcccctaaactcgccaacttgacccatttcttctccttctc 121  Q
    |||||||||||||||||  |||||| |||| | |  | || ||||||||   |||| ||||||||||||||| ||| || ||||| ||||||||||||||    
T  18571108 acaaatccgaagcagaaatagaaaaagaacctgccatgcctaagaacaaaacaactgtatcccctaaactcgtcaatttcacccacttcttctccttctc 18571207  T
Q  122 atcaag 127  Q
    ||||||    
T  18571208 atcaag 18571213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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