View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_191 (Length: 264)

Name: NF8912A_low_191
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_191
NF8912A_low_191
[»] chr7 (20 HSPs)
chr7 (7-258)||(21792118-21792369)
chr7 (21-260)||(21788334-21788573)
chr7 (21-255)||(21681760-21681994)
chr7 (24-247)||(15713741-15713964)
chr7 (24-255)||(21623303-21623534)
chr7 (21-252)||(21646856-21647091)
chr7 (21-187)||(21785584-21785750)
chr7 (21-255)||(21992292-21992526)
chr7 (21-255)||(21689523-21689757)
chr7 (22-255)||(21807970-21808203)
chr7 (21-181)||(21652253-21652413)
chr7 (24-255)||(21704753-21704984)
chr7 (21-255)||(21764172-21764406)
chr7 (22-251)||(21714297-21714526)
chr7 (21-253)||(21726008-21726240)
chr7 (21-253)||(21772073-21772305)
chr7 (21-252)||(21628238-21628469)
chr7 (24-255)||(21664208-21664442)
chr7 (24-187)||(21745710-21745873)
chr7 (215-251)||(21785520-21785556)
[»] scaffold0182 (2 HSPs)
scaffold0182 (20-150)||(25588-25718)
scaffold0182 (203-255)||(25420-25472)
[»] chr1 (1 HSPs)
chr1 (27-101)||(18192049-18192123)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 21792369 - 21792118
Alignment:
Q  7 caaaatgcttccaattctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaaggga 106  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||    
T  21792369 caaaatgcttccatttctccaagatatgcaacaaagaacatccatccacgaacaatatccatgacagcttttcttcgaggctaccaaagccgtcaagaga 21792270  T
Q  107 cttgccggttaaagttaaaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtg 206  Q
    ||||| |||||||||||||||||||||||||||| || |||||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  21792269 cttgcgggttaaagttaaaacatcatcgctaaaacgatccttcagcgtatcaatgttatcggcaatctttttgtgcagatctttcagaatgctttcagtt 21792170  T
Q  207 tttttgatgtattctgctgcccacataagcttgtacttctctcctaactcca 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21792169 tttttgatgtattctgctgcccacataagcttgtacttctctcctaactcca 21792118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 21788573 - 21788334
Alignment:
Q  21 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaag 120  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  21788573 ttctctaagatatacaacaaagaacatccatccacgaacaacatccacgacagcttttcttcgaggcttccaaagccttcaagagacttgccagttaaag 21788474  T
Q  121 ttaaaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgtattc 220  Q
    |||||||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| |   |||||  | ||||||||| ||||||||     
T  21788473 ttaaaacatcgtcgccaaaatgacccttcagttcatcaatgttatctgcaatctttttgtgcagatcctctggaatgtgtccagtgttttcgatgtattt 21788374  T
Q  221 tgctgcccacataagcttgtacttctctcctaactccaaa 260  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  21788373 tgctgcccacataagcttgtacttctctcctaacttcaaa 21788334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 21681994 - 21681760
Alignment:
Q  21 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaag 120  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||| | ||||||||| ||||||  | |||||||||| |||| |||||||||||    
T  21681994 ttctccaagatatgtagcaaagaacatccatccacgaacaacatccatgataacttttcttcaaggctatgatagccttcaagagactcgccggttaaag 21681895  T
Q  121 ttaaaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgtattc 220  Q
    |||||||||| ||||||||||| |||||||  |||||||||||||| ||||| |||||||  ||||| || ||||||||| ||||||||||||||||||     
T  21681894 ttaaaacatcgtcgctaaaatggcccttcaattcatcaatgttatcagcaatttttttgtatagatccttttgaatgcttccagtgtttttgatgtattt 21681795  T
Q  221 tgctgcccacataagcttgtacttctctcctaact 255  Q
    |||||||||||||||||||||||||||||||||||    
T  21681794 tgctgcccacataagcttgtacttctctcctaact 21681760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 15713964 - 15713741
Alignment:
Q  24 tccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaagtta 123  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||| |||||||||||||    
T  15713964 tccaagatatgcagcaaagagcatccatccacgaacaacatccatgacagcttttcttctaggctaccaaatccttgaagtgactttccggttaaagtta 15713865  T
Q  124 aaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgtattctgc 223  Q
    ||||||| || |||||||||| |||||| |||||||||||||| ||||||||||||||||| || |   |||||||| |||||||||||||||||| |||    
T  15713864 aaacatcgtcactaaaatgacacttcagttcatcaatgttatcagcaatctttttgtgcagttcctctagaatgcttccagtgtttttgatgtattttgc 15713765  T
Q  224 tgcccacataagcttgtacttctc 247  Q
     |||||||||||||||||||||||    
T  15713764 cgcccacataagcttgtacttctc 15713741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 255
Target Start/End: Complemental strand, 21623534 - 21623303
Alignment:
Q  24 tccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaagtta 123  Q
    |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||  | |||||||||||||||||| ||||| |||||||||||||    
T  21623534 tccatgatatgcagcaaagaacatccatccacgaacaacatccacgacagcttttctttaatgctaccaaagccttcaagagactttccggttaaagtta 21623435  T
Q  124 aaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgtattctgc 223  Q
    ||||||| || ||||||||||||||||| |||||||| ||||| |||||||| ||||||| ||| |||||||   ||   |||||||||||||||| |||    
T  21623434 aaacatcgtcactaaaatgacccttcagttcatcaatattatcagcaatcttgttgtgcatatccttctgaacttttctggtgtttttgatgtattttgc 21623335  T
Q  224 tgcccacataagcttgtacttctctcctaact 255  Q
    ||||||||||||||||||||||||||||||||    
T  21623334 tgcccacataagcttgtacttctctcctaact 21623303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 21647091 - 21646856
Alignment:
Q  21 ttctccaagatatgcaacaaagaacatccat----ccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggtt 116  Q
    ||||| |||||||||| ||||||||||||||    |||||||||| ||||| |||| ||||||||| |||||||  ||||||| ||| |||||||||||     
T  21647091 ttctctaagatatgcagcaaagaacatccatatatccacgaacaatatccacgacaacttttcttcaaggctacggaagcctttaagagacttgccggtc 21646992  T
Q  117 aaagttaaaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgt 216  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||||||  ||||||||||||| ||||| |||| ||| ||| | |||||||||||||    
T  21646991 aaagttaaaacgtcgtcgctaaaatgacccttcagttcatcaatgttatctacaatctttttgtgtagatccttcttaattcttcccgtgtttttgatgt 21646892  T
Q  217 attctgctgcccacataagcttgtacttctctccta 252  Q
    ||| ||||||||||||||||||||| ||||||||||    
T  21646891 attttgctgcccacataagcttgtatttctctccta 21646856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 21785750 - 21785584
Alignment:
Q  21 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaag 120  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||| |||| |||||||||||    
T  21785750 ttctccaagatatgtagcaaagaacatccatccacaaacaacatccacgacagcttttcttcaaggctaccaaagtcttcaagagactggccggttaaag 21785651  T
Q  121 ttaaaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatc 187  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  21785650 ttaaaacatcatcgctaaaatgacccttcagttcattaatgttatcggcaatctttttgtgtagatc 21785584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 21992526 - 21992292
Alignment:
Q  21 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaag 120  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || | |||||    
T  21992526 ttctctaagatatacaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggcttccaaagccttcaagagactttccagctaaag 21992427  T
Q  121 ttaaaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgtattc 220  Q
    |||||||||| || ||||||||||||||||| |||||||||||||||  |||||||||||| |||||     || |   | | |  |||| ||||||||     
T  21992426 ttaaaacatcgtcactaaaatgacccttcagttcatcaatgttatcgataatctttttgtgtagatcgcatggattaagtcctgcattttcgatgtattt 21992327  T
Q  221 tgctgcccacataagcttgtacttctctcctaact 255  Q
    |||||||||| ||||||||||||||||||||||||    
T  21992326 tgctgcccacgtaagcttgtacttctctcctaact 21992292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 21689757 - 21689523
Alignment:
Q  21 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaag 120  Q
    |||||||||||||  | |||||| ||||||||||| ||||||||||| || ||||||||||| || ||| |||||||||| || || || ||||| || |    
T  21689757 ttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttccggtcaatg 21689658  T
Q  121 ttaaaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgtattc 220  Q
    |||||||||| ||   ||||||||||||||| | ||||||||||||  |||| |||||||| |||||  ||||||||||| ||||||||||||||||||     
T  21689657 ttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatgcttccagtgtttttgatgtattt 21689558  T
Q  221 tgctgcccacataagcttgtacttctctcctaact 255  Q
    |||||||||||||||||||||||||||||||||||    
T  21689557 tgctgcccacataagcttgtacttctctcctaact 21689523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 21807970 - 21808203
Alignment:
Q  22 tctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaagt 121  Q
    ||||||||||||  | |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  21807970 tctccaagatataaagcaaagagcatccatccacgaacaacatccatgacagcttttcttcaaggctaccaaagccttcaagagactggccggttaaagt 21808069  T
Q  122 taaaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgtattct 221  Q
    ||||||||| |||| ||||||||||||||| ||||| |||||||| |||||||||||||| ||||| |   ||||     |  ||||||  |||||||      
T  21808070 taaaacatcgtcgccaaaatgacccttcagttcatcgatgttatcagcaatctttttgtgtagatcctctagaataaagccgctgttttctatgtatttc 21808169  T
Q  222 gctgcccacataagcttgtacttctctcctaact 255  Q
    || | |||||||||||||||||||||||||||||    
T  21808170 gcagaccacataagcttgtacttctctcctaact 21808203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 21652413 - 21652253
Alignment:
Q  21 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaag 120  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||| |||| ||||||||| |||||| ||||||||||||| |||||||| |||||||    
T  21652413 ttctccaagatatgcagcaacgaacatccatccacgaacaacatccacgacaacttttcttcaaggctatcaaagccttcaagagacttgccagttaaag 21652314  T
Q  121 ttaaaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtg 181  Q
    |||||||||| ||||||||||||||||| || || | ||| ||||||||||||||||||||    
T  21652313 ttaaaacatcgtcgctaaaatgaccctttagttcgttaattttatcggcaatctttttgtg 21652253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 255
Target Start/End: Complemental strand, 21704984 - 21704753
Alignment:
Q  24 tccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaagtta 123  Q
    ||||||||||| | ||||||||||||||||| |||||| ||||| ||||||||||| || ||||   ||||||||| ||| || || ||||||| |||||    
T  21704984 tccaagatatggagcaaagaacatccatccatgaacaatatccacgacagcttttcatcaaggcactcaaagccttgaagagagtttccggttagagtta 21704885  T
Q  124 aaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgtattctgc 223  Q
    ||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| || || |   ||||   | | |||||||  ||||||| |||    
T  21704884 aaacatcatcgctaaaacgacccttcagttcatcaatgttatctgcaatctttttgtgtagttcctctggaataagtccggtgttttctatgtattttgc 21704785  T
Q  224 tgcccacataagcttgtacttctctcctaact 255  Q
    ||||||||||||||||||||||||||||||||    
T  21704784 tgcccacataagcttgtacttctctcctaact 21704753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 21764406 - 21764172
Alignment:
Q  21 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaag 120  Q
    |||||||||| ||  | |||||| ||||||||||||||||||||||| |||| ||||||||| ||||||  |||||||||||| ||||| || |||||||    
T  21764406 ttctccaagagataaagcaaagagcatccatccacgaacaacatccacgacaacttttcttcaaggctatgaaagccttcaagagactttccagttaaag 21764307  T
Q  121 ttaaaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgtattc 220  Q
    |||||||||||||||||||| |||||||||| ||||| |||||||| |||||||||| ||| || || |   || |   | | |||||||  ||||||||    
T  21764306 ttaaaacatcatcgctaaaacgacccttcagttcatcgatgttatcagcaatcttttggtgtagttcctctggattaagtgcggtgttttctatgtattc 21764207  T
Q  221 tgctgcccacataagcttgtacttctctcctaact 255  Q
    |||||||||| ||||||||||||||||||||||||    
T  21764206 tgctgcccacttaagcttgtacttctctcctaact 21764172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 21714526 - 21714297
Alignment:
Q  22 tctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaagt 121  Q
    ||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||   | |||| |||     
T  21714526 tctccaagatatgaagcaaagaacatccatccacgaacaacatccacgatagcttttcttcaaggctaccaaagccttcaagagaccaactggttgaagc 21714427  T
Q  122 taaaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgtattct 221  Q
    ||||||||| | |  ||||||||||||||| |||||||||||||| |||||||||||||| ||||| |   |||||  |   |||||||  ||||||| |    
T  21714426 taaaacatcgttgtcaaaatgacccttcagttcatcaatgttatctgcaatctttttgtgtagatcctctggaatgtgtctggtgttttctatgtatttt 21714327  T
Q  222 gctgcccacataagcttgtacttctctcct 251  Q
    |||||||||||||| |||||||||||||||    
T  21714326 gctgcccacataagtttgtacttctctcct 21714297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 21726240 - 21726008
Alignment:
Q  21 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaag 120  Q
    ||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |||| |||   | |||| |||    
T  21726240 ttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctacgaaagcctgcaagagaccatctggttgaag 21726141  T
Q  121 ttaaaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgtattc 220  Q
     ||||||||| |||  ||||||||||||||| |||||||||||||| |||||||||||||| ||||| |   |||||  | | |||||||  |||||||     
T  21726140 ctaaaacatcgtcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatgtgtccggtgttttctatgtattt 21726041  T
Q  221 tgctgcccacataagcttgtacttctctcctaa 253  Q
    ||||||||||||||| ||||||| |||| ||||    
T  21726040 tgctgcccacataagtttgtactactctgctaa 21726008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 21772305 - 21772073
Alignment:
Q  21 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaag 120  Q
    ||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||||| |||| |||   | |||| |||    
T  21772305 ttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaag 21772206  T
Q  121 ttaaaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgtattc 220  Q
    ||||||||||||||  ||||||||||||||| |||||||||||||| |||||||||||||| ||||| |   |||||  | |  | ||||  |||||||     
T  21772205 ttaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttattttctatgtattt 21772106  T
Q  221 tgctgcccacataagcttgtacttctctcctaa 253  Q
    ||||||||||||||| |||||||||||| ||||    
T  21772105 tgctgcccacataagtttgtacttctctgctaa 21772073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 21628469 - 21628238
Alignment:
Q  21 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaag 120  Q
    |||||||||||||  | |||||| ||||||||||||||||||||||| |||||||||||||| ||||  |||||||||| ||| || || || ||||||     
T  21628469 ttctccaagatataaagcaaagagcatccatccacgaacaacatccacgacagcttttcttcaaggcatccaaagccttgaagagagtttcccgttaaat 21628370  T
Q  121 ttaaaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgtattc 220  Q
    |||||||||| ||||||||| |||||||||| |||||||||||||| |||||||||||||| || || |   ||||   | || ||||||  |||||||     
T  21628369 ttaaaacatcgtcgctaaaacgacccttcagttcatcaatgttatcagcaatctttttgtgtagttcctctggaataagtccaatgttttctatgtattt 21628270  T
Q  221 tgctgcccacataagcttgtacttctctccta 252  Q
    || |||||||| ||||||||||||||||||||    
T  21628269 tgatgcccacacaagcttgtacttctctccta 21628238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 24 - 255
Target Start/End: Complemental strand, 21664442 - 21664208
Alignment:
Q  24 tccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaagtta 123  Q
    ||||||||||  | |||||| ||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||    
T  21664442 tccaagatataaagcaaagagcatccatccacgaacaatatccacgacagcttttcttcaaggcttccaaagccttcaagagacttgccggttaaagtta 21664343  T
Q  124 aa---acatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatctttctgaatgctttcagtgtttttgatgtattc 220  Q
    ||   |||||||||  ||||||||||||||| ||||| ||||||||   |||||||||||| |||||     || ||  |   || ||||  |||||||     
T  21664342 aaattacatcatcgtcaaaatgacccttcagttcatcgatgttatcaaaaatctttttgtgtagatcccgtggattgagtcttgtattttcaatgtattt 21664243  T
Q  221 tgctgcccacataagcttgtacttctctcctaact 255  Q
    ||||||||||||||||||||||||| |||||||||    
T  21664242 tgctgcccacataagcttgtacttccctcctaact 21664208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 21745873 - 21745710
Alignment:
Q  24 tccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaagtta 123  Q
    ||||||||||| | ||||||||||||||| ||||| |||||||| |||||||||||||| ||||   ||||||||| ||| || || || ||||||||||    
T  21745873 tccaagatatggagcaaagaacatccatctacgaataacatccacgacagcttttcttcaaggcattcaaagccttgaagagaatttccagttaaagtta 21745774  T
Q  124 aaacatcatcgctaaaatgacccttcagatcatcaatgttatcggcaatctttttgtgcagatc 187  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||  |||||||||||||||||||    
T  21745773 aaacatcgtcgctaaaacgacccttcagttcatcaatgttatcaacaatctttttgtgcagatc 21745710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 21785556 - 21785520
Alignment:
Q  215 gtattctgctgcccacataagcttgtacttctctcct 251  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  21785556 gtattttgcggcccacataagcttgtacttctctcct 21785520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 25718 - 25588
Alignment:
Q  20 attctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttcaagggacttgccggttaaa 119  Q
    ||||||||||||||| | |||||||||||||||||||||||||||| | |||||||||||||| ||| |||||||||||||||| |||||    ||||||    
T  25718 attctccaagatatgtagcaaagaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttttagttaaa 25619  T
Q  120 gttaaaacatcatcgctaaaatgacccttca 150  Q
    ||||||||||| |||||||||||||||||||    
T  25618 gttaaaacatcctcgctaaaatgacccttca 25588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 25472 - 25420
Alignment:
Q  203 agtgtttttgatgtattctgctgcccacataagcttgtacttctctcctaact 255  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||||||||||    
T  25472 agtgttttctatgtattctgctgcccacttaagcttgtacttctctcctaact 25420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 18192049 - 18192123
Alignment:
Q  27 aagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaagccttca 101  Q
    |||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| | | || |||||||||||    
T  18192049 aagatacgcaacaaagaacatccatccacaaacaacatccatgatagcttttcttccaagttatcaaagccttca 18192123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University