View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_197 (Length: 261)
Name: NF8912A_low_197
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_197 |
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| [»] scaffold0328 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0328 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 2764 - 2983
Alignment:
| Q |
38 |
tttatttctctctgggttgttatcatgtgagagtttatttctctctaggtatgttatgatttgtgagagtttatttctttctgtgaagttttatttatgt |
137 |
Q |
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| T |
2764 |
tttatttctctctggattgttatcatgtgagagtttatttctctctagacatgttatgattagtgagagtttatttctttatatggagttttatttatgg |
2863 |
T |
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| Q |
138 |
gagtttatttctctctgggtatgatatttttgtggagtttatttctccctgtgtgtttgaagcttttatgtgaggttgggtatttccaaattctgttgta |
237 |
Q |
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| T |
2864 |
gattttatttctccctgggtatgatatttttgtagagtttatttctccttgtgtgtttgaagcttttatgtgaggctgggtatttccaaattctattgta |
2963 |
T |
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| Q |
238 |
gtatgcctctgatgtttttg |
257 |
Q |
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| T |
2964 |
gtatgcctctggtgtttttg |
2983 |
T |
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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 261
Target Start/End: Original strand, 20072979 - 20073100
Alignment:
| Q |
139 |
agtttatttctctctgggtatgatatttttgtggagtttatttctccctgtgtgtttgaagcttttatgtgaggttgggtatttccaaattctgttgtag |
238 |
Q |
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| T |
20072979 |
agtttatttctcattgagtatgttatttttgtggagtttatttctccctatgtgtttgaag-ttttctttgaggctggatatttccaatttccgctgtag |
20073077 |
T |
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| Q |
239 |
tatgcctctgatgtttttggtga |
261 |
Q |
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| T |
20073078 |
taagcctctgatgtttttggtga |
20073100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 6628212 - 6628271
Alignment:
| Q |
96 |
atttgtgagagtttatttctttctg-tgaagttttatttatgtgagtttatttctctctg |
154 |
Q |
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| T |
6628212 |
atttttgagagtttatttctttctgatgaagttttacttgtgagagtttatttctctctg |
6628271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 19705890 - 19705939
Alignment:
| Q |
32 |
tgggagtttatttctctctgggttgttatcatgtgagagtttatttctctct |
83 |
Q |
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| T |
19705890 |
tgggagtttatttctccctgggttgctgt--tgtgagagtttatttctctct |
19705939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 19004970 - 19005019
Alignment:
| Q |
32 |
tgggagtttatttctctctgggttgttatcatgtgagagtttatttctctct |
83 |
Q |
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| T |
19004970 |
tgggagtttatttctccctggattgatat--tgtgagagtttatttctctct |
19005019 |
T |
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