View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_198 (Length: 261)
Name: NF8912A_low_198
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_198 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 77 - 244
Target Start/End: Complemental strand, 41104052 - 41103885
Alignment:
| Q |
77 |
tctcagacgcaatagttgatgaaaacatagaaaccgcacgcactcttataaccaaatggaacactgtctctacttcttctaaccattctaattctctttt |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41104052 |
tctcagacgcaatagttgatgaaaacatagaaaccgcacgcactcttataaccaaatggaacactgtctctacttcttctaaccattctaattctctttt |
41103953 |
T |
|
| Q |
177 |
caccaacactcgtcaagaagccaaacgctatcttaaagccgttaagagtctacaatccgctatgatgt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41103952 |
caccaacactcgtcaagaagccaaacgctatcttaaagccgttaagagtctacaatccgctatgatgt |
41103885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University