View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_200 (Length: 261)
Name: NF8912A_low_200
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_200 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 21642674 - 21642420
Alignment:
| Q |
1 |
atgaaaacatctcccaaggtttacgtcattcaacgtagaacaagctttaataacggaagatagagtaaaagcattgggttgaataggaaatgccaacatt |
100 |
Q |
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|||||| ||||||||||||||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21642674 |
atgaaagcatctcccaaggtttacgtcatttaacgcagaacaagctttgataacagaagatagagtaaaagcattgggttgaacaggaaatgccaacatt |
21642575 |
T |
|
| Q |
101 |
tcgtagaataaagatatcgactgatgtggctggccggagcgagtgtaaccggagataagtgaagtccatgagataacatctttgacgtgaagtgagtcga |
200 |
Q |
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|||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21642574 |
tcgtagaataaagatatcgattgatgtggcaggtcggagcgagtgtaaccggagataagtgaagtccatgagatgacatctttgacgtgaagtgagtcga |
21642475 |
T |
|
| Q |
201 |
agagatgacgggcgtgagataaatgggggccggggtttaatttaaagtaaagagt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21642474 |
agagatgacgggcgtgagataaatgggggccggggtttaatttaaagtaaagagt |
21642420 |
T |
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