View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_202 (Length: 261)
Name: NF8912A_low_202
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_202 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 48552612 - 48552856
Alignment:
| Q |
11 |
catagatagatgagttctaaaaagattacatggaagtctattgtcttgatcttaggttgttacaagacaaaatactcattagaagaaccagagaaaaagg |
110 |
Q |
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| T |
48552612 |
catagatagatgaattctaaaaagattacatggaagtctattgtcttgatcttaggttgttacaagacaaaatactcattagaagaaccagaaaaaaagg |
48552711 |
T |
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| Q |
111 |
ttttaaaacaaggttctttctaaagggtaagcttatctgatataagcatttctagctctactactcaagctattgaggatctatccatttcactagctgg |
210 |
Q |
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| T |
48552712 |
ttttaaaacaaggttctttccaaagggtaagcttatctgatataagcatttctagctctactactcaagctattgaggatctttccatttcactagctgg |
48552811 |
T |
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| Q |
211 |
ttcaaagctttacacatttacactagaggagctaagagaagcaac |
255 |
Q |
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| T |
48552812 |
ttcaaagctttacacatttacacttgaggagctaagagaagcaac |
48552856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 255
Target Start/End: Complemental strand, 3676133 - 3675908
Alignment:
| Q |
27 |
ctaaaaagattacatggaagtctattgtcttgatcttaggttgttacaagacaaaatactcattagaagaaccagagaaaaaggttttaaaacaaggttc |
126 |
Q |
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| T |
3676133 |
ctaaaaagataacatggaagtctatgatcttgatcctaaattgttacaagagtaaataccctttggaggaatcagagaaacatgttctaaaacaaggttc |
3676034 |
T |
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| Q |
127 |
tttctaaagggtaagcttatctgatataagcatttctagctctactactcaagctattgaggatctatccatttcactagctggttcaaagctttacaca |
226 |
Q |
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| T |
3676033 |
tttgcaaagactatgtttatcagatataagcaattcaag---ttcaagtcaagctattgaagatctttcagtttcttttgctggttctaaacttcatgca |
3675937 |
T |
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| Q |
227 |
tttacactagaggagctaagagaagcaac |
255 |
Q |
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| T |
3675936 |
ttcacacttgaggagctaaaagaagcaac |
3675908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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