View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_204 (Length: 260)
Name: NF8912A_low_204
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_204 |
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| [»] chr4 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 16898697 - 16898940
Alignment:
| Q |
17 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcactt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16898697 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcactt |
16898796 |
T |
|
| Q |
117 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16898797 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggt |
16898896 |
T |
|
| Q |
217 |
tacttccaattacgtaaatcaatagttcaaaccgcactcaaagg |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16898897 |
tacttccaattacgtaaatcaatagttcaaaccgcactcaaagg |
16898940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 18347212 - 18347455
Alignment:
| Q |
17 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcactt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18347212 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactaccgaactcaatcactt |
18347311 |
T |
|
| Q |
117 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347312 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggt |
18347411 |
T |
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| Q |
217 |
tacttccaattacgtaaatcaatagttcaaaccgcactcaaagg |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347412 |
tacttccaattacgtaaatcaatagttcaaaccgcactcaaagg |
18347455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 34689050 - 34689095
Alignment:
| Q |
41 |
caattttgtcttctccatattactatatctttagggtcaataattt |
86 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
34689050 |
caattttgtcttctccatattactatatctagaaggtcaataattt |
34689095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 13237279 - 13237036
Alignment:
| Q |
17 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcactt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13237279 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactaccgaactcaatcactt |
13237180 |
T |
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| Q |
117 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13237179 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggt |
13237080 |
T |
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| Q |
217 |
tacttccaattacgtaaatcaatagttcaaaccgcactcaaagg |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13237079 |
tacttccaattacgtaaatcaatagttcaaaccgcactcaaagg |
13237036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 41641789 - 41641583
Alignment:
| Q |
17 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcactt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41641789 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactaccgaactcaatcactt |
41641690 |
T |
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| Q |
117 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41641689 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggt |
41641590 |
T |
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| Q |
217 |
tacttcc |
223 |
Q |
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||||||| |
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| T |
41641589 |
tacttcc |
41641583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 198797 - 198554
Alignment:
| Q |
17 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcactt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| |||||| ||||||||||||||||||||| |
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| T |
198797 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattaccatatctctagagtcaataattttctatgaggaactactgaactcaatcactt |
198698 |
T |
|
| Q |
117 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggt |
216 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||| |
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| T |
198697 |
gctgccgttactcaacagttttctgttgaggtctatcccgtagaggtagtcaaattggatcagtgatcgatttctaggtttcgtcgtaaacctaattggt |
198598 |
T |
|
| Q |
217 |
tacttccaattacgtaaatcaatagttcaaaccgcactcaaagg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
198597 |
tacttccaattacgtaaatcaatagttcaaaccgcactcaaagg |
198554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 282224 - 282366
Alignment:
| Q |
22 |
gttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcacttgctgc |
121 |
Q |
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||||||| |||||| |||||||||||||||||||||||||| |||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
282224 |
gttctgtgcgtgcttcaaacaattttgtcttctccatattaccatatctctagagtcaataattttctatgaggaactactgaactcaatcacttgctgc |
282323 |
T |
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| Q |
122 |
cgttactcttcagttttctgttgaagtctatcctgtagaggta |
164 |
Q |
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|||||||| |||||||||||||| |||||||| ||||||||| |
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| T |
282324 |
cgttactcaacagttttctgttgaggtctatcccgtagaggta |
282366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 33064946 - 33064703
Alignment:
| Q |
17 |
ttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcactt |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
33064946 |
ttcgtgttttgtcggtgcttgaaacaattttgccttctccatattactatatctttagggtcaaaaaatttatatgagaaactactgaactcaatcactt |
33064847 |
T |
|
| Q |
117 |
gctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggt |
216 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| |
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| T |
33064846 |
attgtcgttactctttagttttctgttgaagtctatccggtagaggtactcaaattggatccgtgatcgattgatagatttcgccgtaatcttaattggt |
33064747 |
T |
|
| Q |
217 |
tacttccaattacgtaaatcaatagttcaaaccgcactcaaagg |
260 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
33064746 |
tacttccaattacataaatcaatagttcaaatcacactcaaagg |
33064703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 33420354 - 33420420
Alignment:
| Q |
195 |
tttcgccgtaaacctaattggttacttccaattacg-taaatcaatagttcaaaccgcactcaaagg |
260 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33420354 |
tttcgccgtaaatctaattggttacttccaattacgataaatcaatagttcaaaccgcactcaaagg |
33420420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 4162412 - 4162364
Alignment:
| Q |
61 |
tactatatctttagggtcaataattttatatgagaaactactgaactca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
4162412 |
tactatatctttagggtcaataattttatatgagaaacaactgaactca |
4162364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 4174851 - 4174896
Alignment:
| Q |
64 |
tatatctttagggtcaataattttatatgagaaactactgaactca |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4174851 |
tatatctttagggtcaataattttatatgagaaacaactgaactca |
4174896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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