View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_207 (Length: 260)
Name: NF8912A_low_207
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_207 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 6961068 - 6961322
Alignment:
| Q |
6 |
gtttggtgttgccattggtttgaaggagggataattagcatcattt-gccactagtcatggatattgtatggtgtaatgtaannnnnnnnngcatgaaac |
104 |
Q |
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| T |
6961068 |
gtttgttgttgccattggtttgagggagggataattagcatcattttgccactagtcatggatattgtatggtgtaatgtaatttttttt-gaatgaaac |
6961166 |
T |
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| Q |
105 |
cactttcattatgtggttaaatattggttaaatagttgtttattgagtttgagtgtccattgctgttgctatgaaatagtacaatgattaggaggcggtg |
204 |
Q |
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| T |
6961167 |
cactttcattatgtggttaaatattggttaaatagttatttattgagtttgagtgtccattgctgttgctatgaaatagtacaatgattaggaggcggtg |
6961266 |
T |
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| Q |
205 |
tacgctttcggctatgtatcttgatcattatgttttgaaaaccatctgtttgatga |
260 |
Q |
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| T |
6961267 |
tacgctttcggctatgtatcttgatcattatgttttgaaaaccatctgtttgatga |
6961322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 6960888 - 6960944
Alignment:
| Q |
186 |
caatgattaggaggcggtgtacgctttcggctatgtatcttgatcattatgttttga |
242 |
Q |
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| T |
6960888 |
caatgattaggaagaggtgtacatgttcggctatgtatcttgatcattatgttttga |
6960944 |
T |
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