View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_209 (Length: 258)
Name: NF8912A_low_209
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_209 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 30810322 - 30810542
Alignment:
| Q |
17 |
cacaatctcccctcacattaaatgtgtatgtctacccctcttcatctactatattatata--aatacatagttaccttcaaatttcttttacactataaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30810322 |
cacaatctcccctcacattaaatgtgtatgtctacctctcttcatctactatattatatataaatacaaagttaccttcaaatttcttttacactataaa |
30810421 |
T |
|
| Q |
115 |
aactct--tcaacatttatttacttattctatcttcaatattcattagtccttcttttaacaaatgattataatataatattgacacaataatggctcgc |
212 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30810422 |
aactctattcaacatttatttacttattctatcttcaatattgattagtccttcttttaacaaatgattataatataatattgacacaacaatggctcgc |
30810521 |
T |
|
| Q |
213 |
ggctatatccatgaacacatg |
233 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30810522 |
ggctatatccatgaacacatg |
30810542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 246
Target Start/End: Original strand, 30814920 - 30815028
Alignment:
| Q |
136 |
ttattctatcttcaatattcattagtccttcttttaacaaatgattataatataatattgacacaataatggctcgcggctatatccatgaacacatgat |
235 |
Q |
| |
|
||||| ||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |||| ||| || ||| || ||||| ||||||| |
|
|
| T |
30814920 |
ttattttattttcaatattgattggtc-ttcttttaacaaatgattataatataatattgacacaacaatgactcacgactagat-tatgaatacatgat |
30815017 |
T |
|
| Q |
236 |
atatcctaata |
246 |
Q |
| |
|
|||| |||||| |
|
|
| T |
30815018 |
atatgctaata |
30815028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 30820124 - 30820209
Alignment:
| Q |
135 |
cttattctatcttcaatattcattagtccttcttttaacaaatgattataatataatattgacacaataatggctcgcggctatat |
220 |
Q |
| |
|
||||||| | |||||||||| ||| |||||||||||||||||||| ||||||||||||||| ||||| | || ||| ||||||||| |
|
|
| T |
30820124 |
cttattcgaacttcaatattgattggtccttcttttaacaaatgactataatataatattggcacaacagtgactcacggctatat |
30820209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University