View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_21 (Length: 435)
Name: NF8912A_low_21
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 33102500 - 33102087
Alignment:
| Q |
1 |
gaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctcccccacccagaaaaacaacatcagaatcaaccttaaaggaaataatagaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33102500 |
gaagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaagc |
33102401 |
T |
|
| Q |
101 |
agcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccaca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102400 |
agcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccaca |
33102301 |
T |
|
| Q |
201 |
acttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaagattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102300 |
acttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaagattg |
33102201 |
T |
|
| Q |
301 |
tgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatgaacct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102200 |
tgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatgaacct |
33102101 |
T |
|
| Q |
401 |
atagttcatggcat |
414 |
Q |
| |
|
|||||||||||||| |
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|
| T |
33102100 |
atagttcatggcat |
33102087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 265
Target Start/End: Complemental strand, 52716726 - 52716522
Alignment:
| Q |
61 |
aaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaa |
160 |
Q |
| |
|
||||||| ||||||||||| || || || | |||||||| |||||||||||||||||||| | || ||||| |||||| | | ||| ||||| | ||| |
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|
| T |
52716726 |
aaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataagaagtttagcagctctatattcaaacaaaaa |
52716627 |
T |
|
| Q |
161 |
caataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattccc |
260 |
Q |
| |
|
||| | | |||||||||||| | || |||||||| |||| ||| |||||||| | || || | ||||||||||||||| | | ||| || |||||| |
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| T |
52716626 |
caacataagagtgtaccaaataacactttgaagaacaacaatttgtaccataagatttcctgagaaatcaccatacatagctcttaaaagagggattccc |
52716527 |
T |
|
| Q |
261 |
ataac |
265 |
Q |
| |
|
||||| |
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|
| T |
52716526 |
ataac |
52716522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 52711418 - 52711358
Alignment:
| Q |
61 |
aaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
121 |
Q |
| |
|
||||||||||||||||||| || || || | |||||||| |||||||| ||||||||||| |
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|
| T |
52711418 |
aaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
52711358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 72 - 409
Target Start/End: Original strand, 10838653 - 10838990
Alignment:
| Q |
72 |
gaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaag |
171 |
Q |
| |
|
||||| ||||||||||||| || ||||| || ||||| |||||||| ||||| |||| ||||||||||||||| |||||||||||||| | || | || |
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|
| T |
10838653 |
gaatcgaccttaaaggaaacgatggaagccgcggtttctggaaactgctccatgattaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagag |
10838752 |
T |
|
| Q |
172 |
tgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagt |
271 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| | | |||| ||||| |||||||||||||| || | | |||||||||||||||||||| |
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|
| T |
10838753 |
tgtaccaaataatacactgaagaaccacaacttgaaccattaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagt |
10838852 |
T |
|
| Q |
272 |
gttgggtaatgttgaaagagagaagattgtgatcatccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgatt |
371 |
Q |
| |
|
||| || | |||||| | || |||||||| |||||||| ||||| | ||||| ||||| ||||| | || |||||| | |||||||||||| |
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|
| T |
10838853 |
gttaggaagtgttgataatgaaaagattgttatcatccattctaaattgccatttttagtgaacaatgtccataatgaaagtgctactagcatgatgatt |
10838952 |
T |
|
| Q |
372 |
ttttgaagtgtatcagctgcgatgaacctatagttcat |
409 |
Q |
| |
|
||||||||||| || || || |||||||| ||||||| |
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|
| T |
10838953 |
ttttgaagtgtgtctgcagctatgaacctgaagttcat |
10838990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 65 - 238
Target Start/End: Complemental strand, 34971228 - 34971055
Alignment:
| Q |
65 |
aacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaat |
164 |
Q |
| |
|
||||||||||||||| || || || ||||||||| ||||||| |||||||||||||| | ||| |||| | ||||||| | ||||||||| | |||||| |
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|
| T |
34971228 |
aacatcagaatcaactttgaatgatataatagaaccagcagtatcaggaaactgttcaacaatgagaatcctagcacccctatactcaaacaaaaacaac |
34971129 |
T |
|
| Q |
165 |
aacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacat |
238 |
Q |
| |
|
| ||| || |||||||||||||| |||||||| || | |||||||||||||||||| |||| ||||||||||| |
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|
| T |
34971128 |
atcaatgtataccaaatgatacattgaagaacaactatttgaaccataagggtaccagaatcatcaccatacat |
34971055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 274
Target Start/End: Complemental strand, 25038959 - 25038852
Alignment:
| Q |
167 |
caaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataacc |
266 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |||| ||| ||||| | |||| ||| ||||||||||||| || | || | ||||||||||||||| |
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|
| T |
25038959 |
caaagtataccaaatgatacattgaagaacaacaatttgtaccattaaactacctgaaaattcaccatacattcctttaagtaaaggaattcccataacc |
25038860 |
T |
|
| Q |
267 |
aaagtgtt |
274 |
Q |
| |
|
|||||||| |
|
|
| T |
25038859 |
aaagtgtt |
25038852 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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