View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_211 (Length: 257)
Name: NF8912A_low_211
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_211 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 38322596 - 38322852
Alignment:
| Q |
1 |
tccaagaatatgtgttagccataaagtacaaccctgattggcaaaaagtgcaggttcatttttctatactaaatggtcaatgtaatcatatttatgaact |
100 |
Q |
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| T |
38322596 |
tccaacaaaatgtgttagccataaagtacaaccctgattggcaaaaagtgcaggttcatttttctatactatatggtcaatgtaatcatatttatgaact |
38322695 |
T |
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| Q |
101 |
tatgatcttattaattaatagtagcaaataatgttgaatgtatttgtgcagctgaaagaaaacaaaggatatcgacttgtcgaaagtgatgctcaaataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38322696 |
tatgatcttattaattaatagtagcaaataatgttgaatgtatttgtgcagctgaaagaaaacaaaggatatcgacttgtcgaaagtaatgctcaaataa |
38322795 |
T |
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| Q |
201 |
atgcctcaatttcagaatctaaagtccatccttcagagattgaagtgatagaaagag |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38322796 |
atgcctcaatttcagaatctaaagtccatccttcagagattgaagtgatagaaagag |
38322852 |
T |
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