View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_222 (Length: 252)
Name: NF8912A_low_222
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_222 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 30336463 - 30336240
Alignment:
| Q |
17 |
catcaagaaagatgcaataccagatgatatggattggataaaatataatctccatcttgattcaaccctccctcttttccgctgcaaaagaagaaaacaa |
116 |
Q |
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| T |
30336463 |
catcaagaaagatgcaataccagatgatatggattggataaaatataatctccatcttgattcaaccctccctcttttccgctgcaaaagaagaaaacaa |
30336364 |
T |
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| Q |
117 |
aaagaaattccccagtgcattagatattatatacttcctagttctacttcaattgtaaatacattatggccatagcaagacatgtaaatgcagtaaggta |
216 |
Q |
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| T |
30336363 |
aaagaaattccccagtgcattagatattatatacttcctagttctacttcaattgtaaatacattatggccatagcaagacatgtaaatgcagtaaggta |
30336264 |
T |
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| Q |
217 |
atatataagcttcagatgcatatt |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
30336263 |
atatataagcttcagatgcatatt |
30336240 |
T |
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Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 33020228 - 33020416
Alignment:
| Q |
17 |
catcaagaaagatgcaataccagatgatatggattggataaaatataatctccatcttgattcaaccctccctcttttccgctgcaaaagaagaaaacaa |
116 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||| |||||| || ||||| || |||||| |
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| T |
33020228 |
catcaagaaagatgcaataccagatgatgcaaatttgataaaatataatctccat--------aacactccct-ttttccactacaaaaaaa--aaacaa |
33020316 |
T |
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| Q |
117 |
aaagaaattccccagtgcattagatattatatacttcctagttctacttcaattgtaaatacattatggccat---agcaagacatgtaaatgcagtaag |
213 |
Q |
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|||||||||||||||| |||||||||||||||||||||| | ||||||||||||| |||| |||||| | || ||||| ||||||||||||| |||| |
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| T |
33020317 |
aaagaaattccccagtatattagatattatatacttcctattactacttcaattgtcaatagattatgactatcggagcaaaacatgtaaatgcaataag |
33020416 |
T |
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