View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_23 (Length: 434)
Name: NF8912A_low_23
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 112 - 424
Target Start/End: Complemental strand, 45481657 - 45481345
Alignment:
| Q |
112 |
gtaaacttttcttgctttattaaaaagttgagagtatccacaattttaataatagaatgatgattggatgaagacaaggggcattaagccaaactcgaaa |
211 |
Q |
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| T |
45481657 |
gtaaacttttcttgctttattaaaaagttgagagtatccacaattttaataatagaacgatgattggatgaaggcaaggggcattaagccaaactcgaaa |
45481558 |
T |
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| Q |
212 |
agatgatgattacaagtacaaatgtggtgaaagccttggacgaggatgggctaaaataggcactgctctctgtaaggcgagcccatatgcttcatccata |
311 |
Q |
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| T |
45481557 |
agatgatgattacaagtacaaatgaggtgaaagccttggacgaggatgggctaaaataggcactgctctctgtaaggtgagcccatatgcttcatccata |
45481458 |
T |
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| Q |
312 |
ttaagcttttctggacttacaccattctccaactcccaatcatatgcatgagccaacgttgctgtaagaagttgaaccatcctaagaccaagactcatac |
411 |
Q |
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| T |
45481457 |
ttaagcttttctggacttacaccattctccaactcccaatcatatgcatgagccaacgttgctgtaagaagttgaaccatcctaagaccaagactcatac |
45481358 |
T |
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| Q |
412 |
cagcacatattct |
424 |
Q |
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| T |
45481357 |
cagcacatattct |
45481345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 45481709 - 45481653
Alignment:
| Q |
18 |
caaaatgtcctctatggcccattcatagtttacaagcaaacttgaatgtaatgtaaa |
74 |
Q |
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| T |
45481709 |
caaaatgtcctctatggcccattaatagtttacaagcaaacttgaatgtaatgtaaa |
45481653 |
T |
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