View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_234 (Length: 249)
Name: NF8912A_low_234
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_234 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 1530978 - 1531221
Alignment:
| Q |
7 |
tttggagttgctgataactatgtggagaaaaatctgattgttatgagattgttgttagttttcacagttatcacttttctcatcattattctcactaa-c |
105 |
Q |
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| T |
1530978 |
tttggtgttgctgataactatgtggagaaaaatctgattgttatgagattgttgttagttttcacagttatcacttttctcatcattattctcactaaac |
1531077 |
T |
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| Q |
106 |
atcttagaatctccacctcttgatctaggggaatatttccaaatttttatgcttgcatgtatatgtgttttattgatagttatcatatcacctattactg |
205 |
Q |
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| T |
1531078 |
atcttagaatctccacctcttgatctaggggaatatttccaaatttttatgcttgcatgtatatgtgttttattgatagttatcatatcacctattactg |
1531177 |
T |
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| Q |
206 |
atttaattgtttctatcatttgtattattgctctatatccaatg |
249 |
Q |
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| T |
1531178 |
ctttaattgtttctatcatttggattattgctctctctccaatg |
1531221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 1526587 - 1526654
Alignment:
| Q |
27 |
tgtggagaaaaatctgattgttatgagattgttgttagttttcacagttatcacttttctcatcatta |
94 |
Q |
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| T |
1526587 |
tgtggagaaaaatctgattgtcatgagattgttgttagttttcacagttatcacttttctcatcatta |
1526654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 23084443 - 23084370
Alignment:
| Q |
22 |
aactatgtggagaaaaatctgattgttatgagattgttgttagttttcacagttatcacttttctcatcattat |
95 |
Q |
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| T |
23084443 |
aactttgtggagaataatctcattgtcatgagattgttattagttttcacagttatcacttttctcatcattat |
23084370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 1529778 - 1529835
Alignment:
| Q |
54 |
attgttgttagttttcacagttatcacttttctcatcattattctcactaacatctta |
111 |
Q |
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| T |
1529778 |
attgttgttagttttcactgttattacttttctcatcgttattctcactaccatctta |
1529835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 30217178 - 30217124
Alignment:
| Q |
18 |
tgataactatgtggagaaaaatctgattgttatgagattgttgttagttttcaca |
72 |
Q |
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| T |
30217178 |
tgataactttgtggagaaaaatctcattgttatgagattgttgttagttttcaca |
30217124 |
T |
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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 43623782 - 43623859
Alignment:
| Q |
18 |
tgataactatgtggagaaaaatctgattgttatgagattgttgttagttttcacagttatcacttttctcatcattat |
95 |
Q |
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| T |
43623782 |
tgataactttgtggagaaaaatctcatcgttatgagattgttgttagttttcacatctttcaattttctcatcgttat |
43623859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 43995224 - 43995147
Alignment:
| Q |
18 |
tgataactatgtggagaaaaatctgattgttatgagattgttgttagttttcacagttatcacttttctcatcattat |
95 |
Q |
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| T |
43995224 |
tgataactttgtggagaaaaatctcatcgttatgagattgttgttagttttcacatctttcaattttctcatcgttat |
43995147 |
T |
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