View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_235 (Length: 249)

Name: NF8912A_low_235
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_235
NF8912A_low_235
[»] chr2 (7 HSPs)
chr2 (18-176)||(34659911-34660072)
chr2 (32-176)||(4869303-4869448)
chr2 (28-166)||(1895075-1895215)
chr2 (34-166)||(17282268-17282403)
chr2 (28-163)||(3921264-3921402)
chr2 (28-166)||(1551897-1552039)
chr2 (44-126)||(17374993-17375075)
[»] chr1 (4 HSPs)
chr1 (28-176)||(615412-615561)
chr1 (28-166)||(34117716-34117857)
chr1 (28-176)||(34654608-34654760)
chr1 (75-176)||(39709311-39709414)
[»] chr5 (10 HSPs)
chr5 (32-176)||(6030629-6030772)
chr5 (18-176)||(26656389-26656550)
chr5 (18-176)||(26927976-26928137)
chr5 (28-176)||(7271480-7271628)
chr5 (28-176)||(7767328-7767479)
chr5 (72-166)||(18696722-18696818)
chr5 (28-176)||(27170411-27170562)
chr5 (32-166)||(1157532-1157668)
chr5 (28-166)||(41355816-41355957)
chr5 (133-166)||(38958483-38958516)
[»] chr4 (6 HSPs)
chr4 (28-176)||(23054571-23054723)
chr4 (28-166)||(47518762-47518903)
chr4 (72-166)||(53201969-53202065)
chr4 (28-166)||(34227304-34227445)
chr4 (28-126)||(6409686-6409786)
chr4 (36-167)||(24957898-24958033)
[»] chr3 (2 HSPs)
chr3 (28-176)||(18270013-18270163)
chr3 (28-176)||(43275611-43275762)
[»] chr6 (3 HSPs)
chr6 (29-176)||(21881088-21881238)
chr6 (28-166)||(20740273-20740414)
chr6 (44-175)||(34213693-34213827)
[»] chr7 (4 HSPs)
chr7 (28-176)||(39020495-39020646)
chr7 (32-176)||(1778255-1778402)
chr7 (28-176)||(3302099-3302248)
chr7 (28-165)||(11698655-11698795)
[»] chr8 (3 HSPs)
chr8 (28-175)||(10408496-10408646)
chr8 (28-167)||(5994281-5994421)
chr8 (28-122)||(20860974-20861069)
[»] scaffold0009 (1 HSPs)
scaffold0009 (28-114)||(54134-54220)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 34659911 - 34660072
Alignment:
Q  18 acatcaacttaaa--cctacacaacaaccaacaacatttgaaaaataaacaggaataaacccc-aaacaccacccttagctctcccaagcaccttcatcc 114  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||    
T  34659911 acatcaacttaaaaacctacacaacaaccaacaacatttgaaaaataaacgggaataaacccccaaacaccacccttagctctcccatgcaccttcaccc 34660010  T
Q  115 gaaacacacctcgaagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  34660011 gaaacacacctcgaagaaccgcaaaagccaacaaaaaatccttgtaccatcatacaacaagg 34660072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 176
Target Start/End: Original strand, 4869303 - 4869448
Alignment:
Q  32 ctacacaacaaccaacaacatttgaaaaataaacaggaataaa-ccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctcgaag 130  Q
    ||||||||||||||||||| |||||||||||  | |||||||| |||||||||||||| ||||||||||||| |||||||| || |||||||||||||||    
T  4869303 ctacacaacaaccaacaacctttgaaaaatattcgggaataaaaccccaaacaccaccattagctctcccaaacaccttcacccaaaacacacctcgaag 4869402  T
Q  131 aaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
    |||||||||||||||| | ||| |||||||||||||| ||||||||    
T  4869403 aaccgcaaaagccaactacaaacccttgtaccatcatacaacaagg 4869448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 166
Target Start/End: Original strand, 1895075 - 1895215
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaaccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctc- 126  Q
    |||||||||| |||||||| ||| ||||||||| |  | |||| |||||| |||||||||| |||||||||| |||||||||||||| ||||| |||||     
T  1895075 aaacctacaccacaaccaataacctttgaaaaacagccgggaaaaaaccctaaacaccaccattagctctcctaagcaccttcatccaaaacaaacctca 1895174  T
Q  127 -gaagaaccgcaaaagccaaccaaaaatccttgtaccatca 166  Q
      || ||||||||||||||||||||||||||||||||||||    
T  1895175 taaacaaccgcaaaagccaaccaaaaatccttgtaccatca 1895215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 17282403 - 17282268
Alignment:
Q  34 acacaacaaccaacaacatttgaaaaataaacaggaataaaccc-caaacaccacccttagctctcccaagcaccttcatccgaaacacacctc--gaag 130  Q
    |||| |||||||||||| ||||||||| |  |||||| ||| || ||||||||||| |||||||||  |||||||||||||| |||||||||||   ||     
T  17282403 acaccacaaccaacaacctttgaaaaacagccaggaaaaaaacctcaaacaccaccgttagctctcttaagcaccttcatccaaaacacacctcataaac 17282304  T
Q  131 aaccgcaaaagccaaccaaaaatccttgtaccatca 166  Q
    |||||| |||||||||||||||||||||||||||||    
T  17282303 aaccgcgaaagccaaccaaaaatccttgtaccatca 17282268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 163
Target Start/End: Original strand, 3921264 - 3921402
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacagg-aataaaccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctc 126  Q
    |||||||||| |||||||||||| ||||||||| |  | || || ||||||||||||||||| ||||||||||  |||||||||| |  |||||||||||    
T  3921264 aaacctacaccacaaccaacaacctttgaaaaacagccgggaaaaaaaccccaaacaccaccattagctctcctgagcaccttcaccaaaaacacacctc 3921363  T
Q  127 --gaagaaccgcaaaagccaaccaaaaatccttgtacca 163  Q
       || |||||||||||||||||||||||||||||||||    
T  3921364 ataaacaaccgcaaaagccaaccaaaaatccttgtacca 3921402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 166
Target Start/End: Complemental strand, 1552039 - 1551897
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaa--ccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacct 125  Q
    |||||||||| |||||||| ||| ||||||||| | |  | || |||  |||||||||||||| |||||||||| |||||||||||||| |||||| |||    
T  1552039 aaacctacaccacaaccaataacctttgaaaaacagatggaaaaaaaacccccaaacaccaccattagctctcctaagcaccttcatccaaaacacgcct 1551940  T
Q  126 c--gaagaaccgcaaaagccaaccaaaaatccttgtaccatca 166  Q
    |   || || |||||||||||||||||||||||||||||||||    
T  1551939 cataaacaatcgcaaaagccaaccaaaaatccttgtaccatca 1551897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 17374993 - 17375075
Alignment:
Q  44 caacaacatttgaaaaataaacaggaataaa-ccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctc 126  Q
    ||||||| ||||||||| |  | |||||||| |||||||||||||  |||||| ||||||||||||||| || |||||||||||    
T  17374993 caacaacctttgaaaaacagccgggaataaaaccccaaacaccaca-ttagctatcccaagcaccttcacccaaaacacacctc 17375075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 615412 - 615561
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaacccc-aaacaccacccttagctctcccaagcaccttcatccgaaacacacctc 126  Q
    ||||||||||||||||||||||| |||||||||||  | |||||||| ||| |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  615412 aaacctacacaacaaccaacaacttttgaaaaatagtcgggaataaaaccctaaacaccacccttagctctcccaaacaccttcatccaaaacacacctc 615511  T
Q  127 gaagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
    ||||||||||||||| |||||| ||| |||||||||||||| ||||||||    
T  615512 gaagaaccgcaaaagtcaaccacaaacccttgtaccatcatacaacaagg 615561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 166
Target Start/End: Original strand, 34117716 - 34117857
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaa-ccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacct- 125  Q
    |||||||||| ||||||| |||| ||||||||| |  | || ||||| |||||||||||| | ||||||||||||||||||||||||| ||||| ||||     
T  34117716 aaacctacaccacaaccatcaacttttgaaaaacagccggggataaaaccccaaacaccaacgttagctctcccaagcaccttcatccaaaacatacctc 34117815  T
Q  126 -cgaagaaccgcaaaagccaaccaaaaatccttgtaccatca 166  Q
     | |||||||||||||||||||||||||||||||||||||||    
T  34117816 acaaagaaccgcaaaagccaaccaaaaatccttgtaccatca 34117857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 34654608 - 34654760
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaa--ccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacct 125  Q
    |||||| ||||||||| |||||| ||||||||| |  | ||||||||  |||||||||||||| ||||||||||||| |||||||| || || |||||||    
T  34654608 aaacctccacaacaactaacaacctttgaaaaagagccgggaataaaacccccaaacaccaccattagctctcccaaacaccttcacccaaagcacacct 34654707  T
Q  126 --cgaagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
      | ||||||| |||||| |||||||||  |||||||||||||| ||||||||    
T  34654708 cacaaagaaccacaaaagtcaaccaaaatcccttgtaccatcatacaacaagg 34654760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 176
Target Start/End: Complemental strand, 39709414 - 39709311
Alignment:
Q  75 ccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctcg--aagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaac 172  Q
    |||||||||||||| ||||||||||||||  ||||   || |||||||||||   |||||| |||||||||||||||||| ||||||||| |||| || |    
T  39709414 ccccaaacaccaccattagctctcccaagtgccttttcccaaaacacacctcacaaagaactgcaaaagccaaccaaaaacccttgtaccgtcatacatc 39709315  T
Q  173 aagg 176  Q
    ||||    
T  39709314 aagg 39709311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 6030772 - 6030629
Alignment:
Q  32 ctacacaacaaccaacaacatttgaaaaataaacaggaataaaccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctcgaaga 131  Q
    ||||||||||||||||||| |||||||||||  | |||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  6030772 ctacacaacaaccaacaacctttgaaaaatagtcgggaataaaaccccaacaccacccttagctctcccaagcaccttcacccaaaacacacctcgaaga 6030673  T
Q  132 accgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
    || |||||||||||||| ||| |||||||||||||| ||||||||    
T  6030672 actgcaaaagccaaccacaaa-ccttgtaccatcatacaacaagg 6030629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 26656389 - 26656550
Alignment:
Q  18 acatcaacttaaa--cctacacaacaaccaacaacatttgaaaaataaacaggaat-aaaccccaaacaccacccttagctctcccaagcaccttcatcc 114  Q
    |||||||||||||  |||||||||||||||||||| ||||||||| |  | | ||| |||||||||||||||||||||||||||||||||||| ||| ||    
T  26656389 acatcaacttaaaaacctacacaacaaccaacaacctttgaaaaacagtcggaaataaaaccccaaacaccacccttagctctcccaagcaccgtcaccc 26656488  T
Q  115 gaaacacacctcgaagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
     ||||||||||||||||||||| ||||||||| ||||| | |||||||||||| ||||||||    
T  26656489 aaaacacacctcgaagaaccgccaaagccaactaaaaacctttgtaccatcatacaacaagg 26656550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 26927976 - 26928137
Alignment:
Q  18 acatcaacttaaa--cctacacaacaaccaacaacatttgaaaaataaacaggaat-aaaccccaaacaccacccttagctctcccaagcaccttcatcc 114  Q
    |||||||||||||  |||||||||||||||||||| ||||||||| |  | | ||| |||||||||||||||||||||||||||||||||||| ||| ||    
T  26927976 acatcaacttaaaaacctacacaacaaccaacaacctttgaaaaacagtcggaaataaaaccccaaacaccacccttagctctcccaagcaccgtcaccc 26928075  T
Q  115 gaaacacacctcgaagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
     ||||||||||||||||||||| ||||||||| ||||| | |||||||||||| ||||||||    
T  26928076 aaaacacacctcgaagaaccgccaaagccaactaaaaacctttgtaccatcatacaacaagg 26928137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 7271480 - 7271628
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaa-ccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctc 126  Q
    ||||||||||| ||||||||||| ||||||||| |  | |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| |    
T  7271480 aaacctacacagcaaccaacaacctttgaaaaacagtcgggaataaaaccccaaacaccacccttagctctctcaagcaccttcatccaaaacacaccac 7271579  T
Q  127 gaagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
    |||| |||||||||| |||||||||| |||||||||||||| ||||||||    
T  7271580 gaag-accgcaaaagacaaccaaaaacccttgtaccatcatacaacaagg 7271628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 7767479 - 7767328
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaa-ccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacct- 125  Q
    ||||||||||||||||||||||| ||||||||| |  | |||||||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||     
T  7767479 aaacctacacaacaaccaacaacctttgaaaaacagccgggaataaaaccccaaagaccaccattagctctcccaagcaccttcatccaaaacacacctc 7767380  T
Q  126 -cgaagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
     | |||||||| ||||||||||||| || | |||||| ||||| ||||||||    
T  7767379 acaaagaaccgtaaaagccaaccaataacctttgtacgatcatacaacaagg 7767328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 18696722 - 18696818
Alignment:
Q  72 aaaccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacct--cgaagaaccgcaaaagccaaccaaaaatccttgtaccatca 166  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||  | |||||||||||||||||||||||||| | ||||||||||    
T  18696722 aaaccccaaacaccaccgttagctctcccaagcaccttcacccgaaacacacctcacaaagaaccgcaaaagccaaccaaaaattcatgtaccatca 18696818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 27170562 - 27170411
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaa-ccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctc 126  Q
    |||||||||||||| || ||||  ||||||||| |  | |||||||| |||||||||||||| |||||||||||||||||||| | |  |||||||||||    
T  27170562 aaacctacacaacagccgacaatctttgaaaaacagtcgggaataaaaccccaaacaccaccattagctctcccaagcacctttaccgaaaacacacctc 27170463  T
Q  127 g--aagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
       ||||||||||||||||||||||||||||||||||| |||| || |||||    
T  27170462 acaaagaaccgcaaaagccaaccaaaaatccttgtaccctcatgcatcaagg 27170411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 166
Target Start/End: Complemental strand, 1157668 - 1157532
Alignment:
Q  32 ctacacaacaaccaacaacatttgaaaaataaacaggaataaaccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctc--gaa 129  Q
    |||||| |||||||||||| ||||||||| |  | | || ||||||||||||||||| |||||||||| |||||||||||||| |||||||||||   ||    
T  1157668 ctacaccacaaccaacaacctttgaaaaacagtcggaaaaaaaccccaaacaccaccattagctctcctaagcaccttcatccaaaacacacctcataaa 1157569  T
Q  130 gaaccgcaaaagccaaccaaaaatccttgtaccatca 166  Q
     ||||||||||  |||||||||||  |||||||||||    
T  1157568 caaccgcaaaaatcaaccaaaaattgttgtaccatca 1157532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 166
Target Start/End: Complemental strand, 41355957 - 41355816
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaaccccaaa-caccacccttagctctcccaagcaccttcatccgaaacacacctc 126  Q
    |||||||||| |||||| |||||||||||||||||  | |||| ||| |||||| ||||||| |||||||||| | ||||||||| || ||||||| |||    
T  41355957 aaacctacaccacaacctacaacatttgaaaaatagtcgggaaaaaaacccaaaacaccaccattagctctcctacgcaccttcacccaaaacacatctc 41355858  T
Q  127 g--aagaaccgcaaaagccaaccaaaaatccttgtaccatca 166  Q
       || ||| ||||| ||||||||||||||||||||||||||    
T  41355857 ataaataacagcaaacgccaaccaaaaatccttgtaccatca 41355816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 38958516 - 38958483
Alignment:
Q  133 ccgcaaaagccaaccaaaaatccttgtaccatca 166  Q
    ||||||||||||||||||||||||||||||||||    
T  38958516 ccgcaaaagccaaccaaaaatccttgtaccatca 38958483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 23054723 - 23054571
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaa--ccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacct 125  Q
    |||||||||||||||| |||||| ||||||||| |  | ||||||||  |||||||||||||  ||||||||| ||||||||||||||| ||||||||||    
T  23054723 aaacctacacaacaactaacaacctttgaaaaagagtcgggaataaaacccccaaacaccacaattagctctctcaagcaccttcatccaaaacacacct 23054624  T
Q  126 cg--aagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
    |   ||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  23054623 cacaaagaaccgcaaaagccagccaaaaatccttgtaccatcatacaacaagg 23054571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 166
Target Start/End: Complemental strand, 47518903 - 47518762
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacagg-aataaaccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctc 126  Q
    |||||||||| |||||||||||| ||||||||| |  | || || ||||| ||||||||||| |||||||||| ||||||||||| || ||||||| |||    
T  47518903 aaacctacaccacaaccaacaacctttgaaaaacagtcgggaaaaaaacctcaaacaccaccattagctctcctaagcaccttcacccaaaacacatctc 47518804  T
Q  127 --gaagaaccgcaaaagccaaccaaaaatccttgtaccatca 166  Q
       || ||||||||||||||||||||||||||||||||||||    
T  47518803 ataaacaaccgcaaaagccaaccaaaaatccttgtaccatca 47518762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 53201969 - 53202065
Alignment:
Q  72 aaaccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctcg--aagaaccgcaaaagccaaccaaaaatccttgtaccatca 166  Q
    ||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||  || |||||||||||| |||||||||||||||||||||||    
T  53201969 aaaccccaaacaccaccatgagctctcctaagcaccttcatccaaaacacacctcgtaaacaaccgcaaaagctaaccaaaaatccttgtaccatca 53202065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 166
Target Start/End: Complemental strand, 34227445 - 34227304
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaac-cccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctc 126  Q
    |||||||||||||| |||||||| || |||||| |  |  ||| |||  ||||||||||||| || | ||||| |||||||||||||| |||||||||||    
T  34227445 aaacctacacaacagccaacaaccttagaaaaacagccgtgaaaaaaaacccaaacaccaccattggttctcctaagcaccttcatccaaaacacacctc 34227346  T
Q  127 g--aagaaccgcaaaagccaaccaaaaatccttgtaccatca 166  Q
       || |||| |||||||||||||||||||||||||||||||    
T  34227345 ataaacaaccacaaaagccaaccaaaaatccttgtaccatca 34227304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 6409686 - 6409786
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaa-taaaccccaaacaccacccttagctctcccaagcaccttcatcc-gaaacacacct 125  Q
    ||||||||| ||||||||||||| ||||||||| |  | ||||  ||||| |||||| |||| ||||||||||| |||||||||||||  ||||||||||    
T  6409686 aaacctacataacaaccaacaacctttgaaaaacagccgggaagaaaacctcaaacaacaccattagctctcccgagcaccttcatccaaaaacacacct 6409785  T
Q  126 c 126  Q
    |    
T  6409786 c 6409786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 24958033 - 24957898
Alignment:
Q  36 acaacaaccaacaacatttgaaaaataaacaggaataaa-ccccaaacaccacccttagctctcccaagcaccttcatcc-gaaacacacctc--gaaga 131  Q
    ||||||||||||||| ||||||||| |  |  ||| ||| ||||||||| |||| ||| || |||| |||||||||||||  |||||||||||   ||||    
T  24958033 acaacaaccaacaacctttgaaaaacagccgcgaagaaaaccccaaacaacaccattaactttcccgagcaccttcatccaaaaacacacctcttaaaga 24957934  T
Q  132 accgcaaaagccaaccaaaaatccttgtaccatcat 167  Q
    |||| |||| || |||||||| |||| |||||||||    
T  24957933 accgtaaaaaccgaccaaaaacccttataccatcat 24957898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 18270163 - 18270013
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacag-gaataaa-ccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacct 125  Q
    ||||||||||||||||||||||| |||||||||  |   | ||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  18270163 aaacctacacaacaaccaacaacctttgaaaaaacagtcgagaataaaaccccaaacaccacccttagctctcccaagcaccttcacccaaaacacacct 18270064  T
Q  126 cgaagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
    |||||||||||||||| |||| | ||| |||||||||||||| ||| ||||    
T  18270063 cgaagaaccgcaaaagtcaactacaaacccttgtaccatcatacaataagg 18270013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 43275611 - 43275762
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaacccc-aaacaccacccttagctctcccaagcaccttcatccgaaacacacct- 125  Q
    ||||||||||||||||||||||| ||||||||| |  |   |||||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||||     
T  43275611 aaacctacacaacaaccaacaacctttgaaaaacagccgataataaaaccctaaacaccaccattagctctcccaagcaccttcatccaaaacacacctc 43275710  T
Q  126 -cgaagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
     | |||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  43275711 acaaagaaccgcaaaaggcaaccaaaaacccttgtaccatcatacaacaagg 43275762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 21881088 - 21881238
Alignment:
Q  29 aacctacacaacaaccaacaacatttgaaaaataaacaggaataaaccc-caaacaccacccttagctctcccaagcaccttcatccgaaacacacct-- 125  Q
    |||||||||||||||||||||| ||||||||| |  | |||||||| || ||||||||||| |||||||||||||||||||||| || ||||||||||      
T  21881088 aacctacacaacaaccaacaacctttgaaaaacagccgggaataaaacctcaaacaccaccattagctctcccaagcaccttcacccaaaacacacctca 21881187  T
Q  126 cgaagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
    | |||||| ||||||| |||||||||| |||||||||||||| ||||||||    
T  21881188 caaagaactgcaaaagtcaaccaaaaacccttgtaccatcatacaacaagg 21881238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 166
Target Start/End: Original strand, 20740273 - 20740414
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacagg-aataaaccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctc 126  Q
    |||||||||| |||||||||||| ||||||||| |  | || || ||||| ||||||||||| |||||||||| ||||||||||| || ||||||| |||    
T  20740273 aaacctacaccacaaccaacaacctttgaaaaacagccgggaaaaaaacctcaaacaccaccattagctctcctaagcaccttcacccaaaacacatctc 20740372  T
Q  127 --gaagaaccgcaaaagccaaccaaaaatccttgtaccatca 166  Q
       || || ||||||||||||| |||||||||||||||||||    
T  20740373 ataaacaatcgcaaaagccaactaaaaatccttgtaccatca 20740414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 34213827 - 34213693
Alignment:
Q  44 caacaacatttgaaaaataaacaggaataaac-cccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctcg--aagaaccgcaaaa 140  Q
    ||||||| ||||||||| |  | ||||||||  ||||||||||||| |||||||||||||||||| |   || |||||||||||   ||||| |||||||    
T  34213827 caacaacctttgaaaaacagccgggaataaaatcccaaacaccaccattagctctcccaagcaccatatcccaaaacacacctcacaaagaatcgcaaaa 34213728  T
Q  141 gccaaccaaaaatccttgtaccatcattcaacaag 175  Q
    |||||||||||| |||||||||| ||| |||||||    
T  34213727 gccaaccaaaaacccttgtaccaacatccaacaag 34213693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 39020646 - 39020495
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaata-aaccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacctc 126  Q
    ||||||||||||||||||||||| ||||||||| |  | |||||| |||||||||||||||| |||||||||||||||||| ||| || |||||||||||    
T  39020646 aaacctacacaacaaccaacaacctttgaaaaacagtcgggaatacaaccccaaacaccaccattagctctcccaagcaccctcaccctaaacacacctc 39020547  T
Q  127 --gaagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
       |||||||||||||| |||||||||| | |||||||||||| || |||||    
T  39020546 ataaagaaccgcaaaagtcaaccaaaaacctttgtaccatcatacagcaagg 39020495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 176
Target Start/End: Original strand, 1778255 - 1778402
Alignment:
Q  32 ctacacaacaaccaacaacatttgaaaaataaacaggaat-aaaccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacct--cga 128  Q
    ||||||||||||||||||| |||||||||    | ||||| |||||||||||| |||| ||||| ||||||| ||||||||||| | ||||||||  | |    
T  1778255 ctacacaacaaccaacaacctttgaaaaactgtcgggaataaaaccccaaacatcaccattagccctcccaaacaccttcatccaacacacacctcccaa 1778354  T
Q  129 agaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
    ||||||||||||||||| |||||| |||||||||||||| ||| ||||    
T  1778355 agaaccgcaaaagccaaacaaaaacccttgtaccatcatacaataagg 1778402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 3302099 - 3302248
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaaccc-caaacaccacccttagctctcccaagcaccttcatccgaaacacac--c 124  Q
    ||||||||||||||||||||||| ||| ||||| |  | |||| |||  | ||||||||||| ||||||||||||| ||||||||  | ||||||||  |    
T  3302099 aaacctacacaacaaccaacaaccttt-aaaaacactcgggaacaaaatctcaaacaccaccattagctctcccaaacaccttcacacaaaacacacttc 3302197  T
Q  125 tcgaagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaagg 176  Q
     |  ||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  3302198 acagagaaccgcagaagccaaccaaaaa-ccttgtaccatcatacaacaagg 3302248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 11698795 - 11698655
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacagg--aataaaccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacct 125  Q
    |||||||||| |||||||||||| |||| |||| |  | ||  || ||||||||||||| ||| |||||||||| ||||||||||| || ||||||||||    
T  11698795 aaacctacaccacaaccaacaacctttggaaaacagccgggaaaaaaaaccccaaacacaaccattagctctcctaagcaccttca-cccaaacacacct 11698697  T
Q  126 --cgaagaaccgcaaaagccaaccaaaaatccttgtaccatc 165  Q
        || || |||||||||||||||||| ||| |||||||||    
T  11698696 tataaacaatcgcaaaagccaaccaaaactccgtgtaccatc 11698655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 175
Target Start/End: Original strand, 10408496 - 10408646
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaa-ccccaaacaccacccttagctctcccaagcaccttcatccgaaacacacct- 125  Q
    |||||||||||| |||||||||| |||||||| ||  | |||||||| |||||||||||||| ||||||||||||||||||||||  | || ||| |||     
T  10408496 aaacctacacaataaccaacaacctttgaaaattagccgggaataaagccccaaacaccaccattagctctcccaagcaccttcacgcaaagcactcctc 10408595  T
Q  126 -cgaagaaccgcaaaagccaaccaaaaatccttgtaccatcattcaacaag 175  Q
     | ||||| | |||||||||||||||||  ||||||||||||  |||||||    
T  10408596 acaaagaatcacaaaagccaaccaaaaactcttgtaccatcaaacaacaag 10408646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 5994281 - 5994421
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaata-aaccccaaacaccacccttagctctcccaagcaccttcatccgaaacacac--c 124  Q
    ||||||||||||||||||||||| || | |||  |  | |||||| ||| |||||||||||| |||  |||||||||||||||||||| ||||||||  |    
T  5994281 aaacctacacaacaaccaacaaccttgggaaac-agtcgggaatagaacgccaaacaccaccattaattctcccaagcaccttcatccaaaacacacctc 5994379  T
Q  125 tcgaagaaccgcaaaagccaaccaaaaatccttgtaccatcat 167  Q
    || || |||||||||||||||||||||| ||||||||||||||    
T  5994380 tcaaaaaaccgcaaaagccaaccaaaaa-ccttgtaccatcat 5994421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 20860974 - 20861069
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaat-aaaccccaaacaccacccttagctctcccaagcaccttcatccgaaacaca 122  Q
    ||||||| ||||||||||||||| ||||||||| |  |  |||| ||||| ||||||| | | ||||||||| ||| ||||||||||| |||||||    
T  20860974 aaacctatacaacaaccaacaacctttgaaaaacagtcgagaataaaaccacaaacactatcattagctctcgcaaacaccttcatccaaaacaca 20861069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 54134 - 54220
Alignment:
Q  28 aaacctacacaacaaccaacaacatttgaaaaataaacaggaataaaccccaaacaccacccttagctctcccaagcaccttcatcc 114  Q
    ||||| ||||||  ||||||||| ||||||||| |  | | |||||| ||| || | |||| |||||||||||||||||||||||||    
T  54134 aaaccaacacaagcaccaacaacctttgaaaaacagtcggtaataaaaccccaaaaacaccattagctctcccaagcaccttcatcc 54220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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