View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_240 (Length: 249)
Name: NF8912A_low_240
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_240 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 4271875 - 4271694
Alignment:
| Q |
20 |
atcaagctcattagtcaatttactcttcttcttcgcaacaaacttgttcttttgtttcctctctcttattttccaattattctttctgaaaacaaattta |
119 |
Q |
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| T |
4271875 |
atcaagctcacgagtcaatttactcttcttcttcgcaacaaacttgttcttttgtttcctctctcttattttccaatcattctttctgaaaacaaattta |
4271776 |
T |
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| Q |
120 |
tcaaccttccacactcgacaacttgtgtcaatcacagtaacctcacttttcgtgagacccttcaaaccttcctcgcaatctt |
201 |
Q |
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| T |
4271775 |
tcaaccttccacactcgacaacttgtgtcaatcacagtaacctcacttttcgtgaaacccttcaaatcttcctcgcaatctt |
4271694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 42346771 - 42346596
Alignment:
| Q |
21 |
tcaagctcattagtcaatttactcttcttcttcgcaacaaacttgttcttttgtttcctctctcttattttccaa---ttattctttctgaaaacaaatt |
117 |
Q |
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|||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||| | |
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| T |
42346771 |
tcaagctcatgggtcgatttactcttcttcttcgctacaaacttgttcttttgtttcctctctctgattttccaaacattattccttctgaacacaaact |
42346672 |
T |
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| Q |
118 |
tatcaaccttccacactcgacaacttgtgtcaatcacagtaacctcacttttcgtgagacccttcaaaccttcctc |
193 |
Q |
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| T |
42346671 |
tatcaactttccacactggacaactcgtgtctatcacagtaacctcacttttcgtgaaacccttgaaatcttcctc |
42346596 |
T |
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