View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_242 (Length: 249)
Name: NF8912A_low_242
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_242 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 22909687 - 22909928
Alignment:
| Q |
7 |
gggctggtaaagagaacttctccttgtcttccactactcagatctaaacttatccctcacgaatcaaagagaaattgaaccaacaatatttactagtgat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22909687 |
gggctggtaaagagaacttctccttgtctcccactactcagatctaaacttatcccttacgaatcaaagagaaattgaaccaacaatatttactagtgat |
22909786 |
T |
|
| Q |
107 |
taggttatggttttcatttttcaagagtcaagacatttgattgttgaatttgattatgatggataaaaggattttaatgatgaactaannnnnnnagtca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22909787 |
taggttatggttttcatttttcaagagtcaagacatttgattgttgaatttgattatgatggataaaaggattttaatgatgaactattttttttagtca |
22909886 |
T |
|
| Q |
207 |
atcttagttgaaaggataagagtcatcttagttgaaaatatg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22909887 |
atcttagttgaaaggataagagtcatcttagttgaaaatatg |
22909928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 22888143 - 22888385
Alignment:
| Q |
7 |
gggctggtaaagagaacttctccttgtcttccactactcagatctaaacttatccctcacgaatcaaagagaaattgaaccaacaatatttactagtgat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22888143 |
gggctggtaaagagaacttctccttgtctcccactactcagatctaaacttatcccttacgaatcaaagagaaattgaaccaacaatatttactagtgat |
22888242 |
T |
|
| Q |
107 |
taggttatggttttcatttttcaagagtcaagacatttgattgttgaatttgattatgatggataaaaggattttaatgatgaacta-annnnnnnagtc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22888243 |
taggttatggttttcatttttcaagagtcaagacatttgattgttgaatttgattatgatggataaaaggattttaatgatgaactatttttttttagtc |
22888342 |
T |
|
| Q |
206 |
aatcttagttgaaaggataagagtcatcttagttgaaaatatg |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22888343 |
aatcttagttgaaaggataagagtcatcttagttgaaaatatg |
22888385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 22908669 - 22908790
Alignment:
| Q |
7 |
gggctggtaaagagaacttctccttgtcttccactactcagatctaaacttatccctcacgaatcaaagagaaattgaaccaacaatatttactagtgat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22908669 |
gggctggtaaagagaacttctccttgtctcccactactcagatctaaacttatcccttacgaatcaaagagaaattgaaccaacaatatttactagtgat |
22908768 |
T |
|
| Q |
107 |
taggttatggttttcatttttc |
128 |
Q |
| |
|
||| ||||| |||||||||| |
|
|
| T |
22908769 |
tagagtatggacttcatttttc |
22908790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University