View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_246 (Length: 248)
Name: NF8912A_low_246
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_246 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 3176099 - 3176344
Alignment:
| Q |
1 |
ggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3176099 |
ggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagcta |
3176198 |
T |
|
| Q |
101 |
tgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccattttttggtttaagagaaggtaaccttgagagagagggagatgagtgat |
200 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||| |
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| T |
3176199 |
tgaaagaggttatttggagaaagagaaaaaccaatactaaagttttggccattttttggtttaagagaatgtaaccttgaaagagagggagttgagtgat |
3176298 |
T |
|
| Q |
201 |
gttggtgtgttgagagagtgtgatagttgatctatttataagagct |
246 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3176299 |
gttggtgtgttgagagagtgtgagagttgatctatttataagagct |
3176344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24541297 - 24541537
Alignment:
| Q |
1 |
ggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagcta |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||| ||||| ||| |||||||||||||| ||||||||||| |||||| || |||| |
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| T |
24541297 |
ggtgggctagctaatggtttatgaacaggtgacttagttggggaatgatgtggagttgctggtttgtgatgaagagtttctagcttttcagcaaatgcta |
24541396 |
T |
|
| Q |
101 |
tgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccattttttggt-ttaagagaaggtaaccttgagagagagggagatgagtga |
199 |
Q |
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| T |
24541397 |
tgaaagaggttatttggagaaagagaaaaaacaataagagagttttcgccatttttttgtgttaagagaaggtaaccttgaaagagagggagatgagtga |
24541496 |
T |
|
| Q |
200 |
tgttggtgtgttgagagagtgtgatagttgatctatttata |
240 |
Q |
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||||| |||||||||||||||||| |||||||||||||||| |
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| T |
24541497 |
tgttgatgtgttgagagagtgtgagagttgatctatttata |
24541537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 41525215 - 41525460
Alignment:
| Q |
1 |
ggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagcta |
100 |
Q |
| |
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|||||| |||| ||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||| || |||| |
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| T |
41525215 |
ggtgggttagccaatggtttatgaaccggtgacttagttgggg-atgaagtggagttgctggtttgtgatgaagagtttctagctcttcagcaaatgcta |
41525313 |
T |
|
| Q |
101 |
tgaaagaggttatttcgagaaagagaaaaact-aatactaaagttttggccattttttggtttaagagaaggtaaccttgagagagagggagatgagtga |
199 |
Q |
| |
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|||| |||||||||| ||| |||||||||| ||||||| |||||||||||||||||| |||||||||| | ||| |||| ||||||||||| ||| | |
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| T |
41525314 |
tgaaggaggttatttggagtaagagaaaaaaacaatactagagttttggccattttttgttttaagagaatgcaactttgaaagagagggagagaagtaa |
41525413 |
T |
|
| Q |
200 |
tgttggtgtgttgagagagtgtgatagttgatctatttataagagct |
246 |
Q |
| |
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|||||||| ||||||||||||||| |||||||||||||||| ||||| |
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| T |
41525414 |
tgttggtgggttgagagagtgtgagagttgatctatttataggagct |
41525460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 20963957 - 20963741
Alignment:
| Q |
15 |
tggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatt |
114 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
20963957 |
tggtttatgaaccggtgacttagttgggggatgaagtggagttgctggtttgttatgaaaagtttctagctcttcagtaaatgctatgaaagaggttatt |
20963858 |
T |
|
| Q |
115 |
tcgagaaagagaaaaactaatactaaagttttggccatt--ttttggtttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttg |
212 |
Q |
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| |||||||||||||| ||||| | ||||||||||||| ||||| ||||||||| | |||||||| ||||||||||| || |||||||||||||||| |
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| T |
20963857 |
tggagaaagagaaaaaacaataccagagttttggccattttttttgtgttaagagaaag-aaccttgaaagagagggagaggattgatgttggtgtgttg |
20963759 |
T |
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| Q |
213 |
agagagtgtgatagttga |
230 |
Q |
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||||||||||| |||||| |
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| T |
20963758 |
agagagtgtgagagttga |
20963741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 14675143 - 14675257
Alignment:
| Q |
16 |
ggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttattt |
115 |
Q |
| |
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|||||||| | ||||||||| ||||||||||||||||| ||| |||||||||||||| |||||| |||||||| || || | | |||||||||||||| |
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| T |
14675143 |
ggtttatgcaccggtgactttgttgggggatgaagtggtgttgttggtttgtgatgaagagtttcaagctcttccgcaaacacaacgaaagaggttattt |
14675242 |
T |
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| Q |
116 |
cgagaaagagaaaaa |
130 |
Q |
| |
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||| |||||||||| |
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| T |
14675243 |
ggagtaagagaaaaa |
14675257 |
T |
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