View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_247 (Length: 248)
Name: NF8912A_low_247
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_247 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 32409711 - 32409484
Alignment:
| Q |
12 |
tgaaagtagaagcatcgcttgatgttgaaatggatctgtcacctgatgtgaaagtgcagtcatcacctatcatacaaatggagccatcaccaaagtccaa |
111 |
Q |
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| T |
32409711 |
tgaaagtagaagcatcgcttgatgttgaaatggatctgtcacatgatgtgaaagtgtagtcatcacctatcatacaaatggagccatcaccaaagtccaa |
32409612 |
T |
|
| Q |
112 |
taaaaggatgtgtacaatccttgcaaaaagaattagggcatgtttgtgcttgaaccaacatggagataaagatttgaacaatttttgatttgacaaggtt |
211 |
Q |
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| T |
32409611 |
taaaaggatgtgtacaatccttgcaaaaagaattagggcatgtttgtgcttgaaccaacatggagataaagatttgaacaatttttgatttgacaaggtt |
32409512 |
T |
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| Q |
212 |
ttgtcatataaacatatttgatgtccat |
239 |
Q |
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| T |
32409511 |
ttgtcatataaacatatttgaagtccat |
32409484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 3259485 - 3259349
Alignment:
| Q |
66 |
tgcagtcatcacctatcatacaaatggagccatcaccaaagtccaataaaaggatgtgtacaatccttgcaaaaagaattagg-gcatgtttgtgcttga |
164 |
Q |
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| T |
3259485 |
tgcagtcattacctatcatggaaatggagccaccaccaaagtccaatagaagtatctttacaagatttgcaaaaaaaaatgggtgcatgtttatgcttga |
3259386 |
T |
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| Q |
165 |
accaacatggagataaagatttgaacaatttttgatt |
201 |
Q |
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| T |
3259385 |
accagcatagagataaaggtttgaacaacatttgatt |
3259349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 3322508 - 3322379
Alignment:
| Q |
70 |
gtcatcacctatcatacaaatggagccatcaccaaagtccaataaaaggatgtgtacaatccttgcaaaaagaattagggcatgtttgtgcttgaaccaa |
169 |
Q |
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||||||||||||||| |||||||||| |||||||||||||| ||| || | |||| ||||||||||||| | ||||||| ||||||||||| |
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| T |
3322508 |
gtcatcacctatcatggtaatggagccacaaccaaagtccaatagaagtatctttacaggatttgcaaaaagaatgggtacatgtttatgcttgaaccag |
3322409 |
T |
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| Q |
170 |
catggagataaagatttgaacaatttttga |
199 |
Q |
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| T |
3322408 |
catagagataaaggtttgaacaatgtttga |
3322379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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