View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_249 (Length: 248)
Name: NF8912A_low_249
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_249 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 34043020 - 34042787
Alignment:
| Q |
3 |
cgaacaatattacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcattactcct |
102 |
Q |
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| T |
34043020 |
cgaacaatattacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcatcactcct |
34042921 |
T |
|
| Q |
103 |
cgagagctgaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataacagaataaaagaaatttctcatgaaa |
202 |
Q |
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| T |
34042920 |
cgagagctgaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataacagaataaaagaaatttctcatgaaa |
34042821 |
T |
|
| Q |
203 |
cacaaagcgggagaagaatctaacacaacggaac |
236 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34042820 |
cacaaagcgggagaagaatctaacacaacggaac |
34042787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 176
Target Start/End: Original strand, 4046193 - 4046366
Alignment:
| Q |
3 |
cgaacaatattacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcattactcct |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||| ||||||||||||| |||||| |
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| T |
4046193 |
cgaacaatattacctccagattcaatttgtgctgcgatttgaaaagattgaaatagttcatcacaaggtacggaataaatgaatcaggatcatcactcct |
4046292 |
T |
|
| Q |
103 |
cgagagctgaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataa |
176 |
Q |
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||||| ||||||||||||||||||||||||| |||| ||||||||| |||| |||||||| ||||||| |||| |
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| T |
4046293 |
cgagaactgaatgtaacaaaaaatcagcacagcaaccatatgattcagaaactaaatcaactacaaattgataa |
4046366 |
T |
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