View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_25 (Length: 426)
Name: NF8912A_low_25
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 12 - 425
Target Start/End: Original strand, 41168371 - 41168784
Alignment:
| Q |
12 |
tattaaaaagggactcagggaagacattgtttggtgtctatcgttgagagttgaatgctaaaaaaccttacgaannnnnnnnnnnnattacaccgaatat |
111 |
Q |
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| T |
41168371 |
tattaaaaagggactcagggaagacattgtttggtgtctatcgttgagagttgaatgctaaaaaaccttacaaatttttattttttattacaccgaatat |
41168470 |
T |
|
| Q |
112 |
tgatcgtaattgtatttgtcgcctctatatagtacattcagcatattgttttggtaatacttggccattgatgtacatgcagagctcagttttgtaatgt |
211 |
Q |
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| T |
41168471 |
tgatcgtaattgtatttgtcgcctctatatagtacattcagcatattgttttggtaatacttggccattgttgtacatgcagagctcagttttgtaatgt |
41168570 |
T |
|
| Q |
212 |
ttttgttcgattatggatgtcatgtcctttctatttacatctctactacctaaatacttaggaaaattgataattaatggactatatttcaactctgctt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41168571 |
ttttgttcgattatggatgtcatgtcctttctatttacatctctactacctaaatacttaggaaaattgataattaatggactatatttcaactctgctt |
41168670 |
T |
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| Q |
312 |
ccttccactcatctcaaatatttgactgttttgtaggtgattgccaagaggttattggaatctaaacaaaatactccacacttatatttatcatcaggtt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41168671 |
ccttccactcatctcaaatatttgactgttttgtaggtgattgccaagaggttattggaatctaaacaaaatacaccacacttatatttatcatcaggtt |
41168770 |
T |
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| Q |
412 |
ttaatccccttatg |
425 |
Q |
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| T |
41168771 |
ttaatccccttatg |
41168784 |
T |
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