View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_257 (Length: 247)
Name: NF8912A_low_257
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_257 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 3067534 - 3067775
Alignment:
| Q |
1 |
tagagtagtacagatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3067534 |
tagagtagtacagatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccag |
3067633 |
T |
|
| Q |
101 |
tgagtaactttttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataa |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3067634 |
tgagtaactttttcgacaccgacgtgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataa |
3067733 |
T |
|
| Q |
201 |
tgacatatattttcaggctgagaccacactatagtccaacct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3067734 |
tgacatatattttcaggctgagaccacactatagtccaacct |
3067775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 3071184 - 3071411
Alignment:
| Q |
12 |
agatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaacttt |
111 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| |||| ||||||| |||||||||||||||||| |||||| |||||||| | ||||||||||| || |
|
|
| T |
3071184 |
agatcctttgttttactttgttcatcttctgcacatccttgtatgaaatctggcttgcagctaccatgtggatcatcaggatcaagcagtgagtaacgtt |
3071283 |
T |
|
| Q |
112 |
ttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatatt |
211 |
Q |
| |
|
|| |||||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||| | || || ||| ||||||||||| |
|
|
| T |
3071284 |
ttggacaccgacatgttggtctcttatcatctcccaaagtgcagatggtattatatccacaaacaccactacctgaactaacaatatattgacatatatt |
3071383 |
T |
|
| Q |
212 |
ttcaggctgagaccacactatagtccaa |
239 |
Q |
| |
|
|| ||| |||||||||||| |||||||| |
|
|
| T |
3071384 |
tttaggatgagaccacactgtagtccaa |
3071411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 3055768 - 3055555
Alignment:
| Q |
26 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
125 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||| |||||||| ||||||||||| | |||| ||||| ||||| |
|
|
| T |
3055768 |
acttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggatcatcaggatcaaccagtgagtatcgttttggacactgacat |
3055669 |
T |
|
| Q |
126 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagacc |
225 |
Q |
| |
|
||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||| || ||||| ||||||||| ||||| | ||||| |
|
|
| T |
3055668 |
gttggtctcttatcaactcccaaagtgcagaagctattatatccacaaacaccactcccttcattagcaatataattacatatattatcaggtttagacc |
3055569 |
T |
|
| Q |
226 |
acactatagtccaa |
239 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
3055568 |
acactatggtccaa |
3055555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 3040773 - 3040546
Alignment:
| Q |
12 |
agatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaacttt |
111 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||| |||| || |||||||||||||||||| | |||| ||||||||| || ||||||||||| | |
|
|
| T |
3040773 |
agatcctttgttttacatagttcatcttctgcacatccttgtacgaaatctggcttgcagctaccataaggatagtcaggatcaactagtgagtaactat |
3040674 |
T |
|
| Q |
112 |
ttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatatt |
211 |
Q |
| |
|
| |||||||| ||| ||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
3040673 |
ctggacaccgaaatgctggtctcgtatcatctcccaaagtgcatatgctattatatccacaaacaccactaccttcagtaacaaaataatgacatatatt |
3040574 |
T |
|
| Q |
212 |
ttcaggctgagaccacactatagtccaa |
239 |
Q |
| |
|
| ||| |||||||||||| |||||||| |
|
|
| T |
3040573 |
tcgaggatgagaccacactgtagtccaa |
3040546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 3034906 - 3034690
Alignment:
| Q |
26 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
125 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||| | |||| ||||| ||||| |
|
|
| T |
3034906 |
acttggttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaaatggatcttcaggatcaaccagcgagtatcgttttggacactgacat |
3034807 |
T |
|
| Q |
126 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagacc |
225 |
Q |
| |
|
| || ||||||| || |||||||||| ||||||||||||||||||||||||||||| || || |||| ||||||||| ||||||| ||||| |
|
|
| T |
3034806 |
ttcggtctcttatcaacttccaaagtgcataagctattatatccacaaacaccactacctgcactaacaatataagtacatatattatcaggcttagacc |
3034707 |
T |
|
| Q |
226 |
acactatagtccaacct |
242 |
Q |
| |
|
||||| | ||||||||| |
|
|
| T |
3034706 |
acactgtggtccaacct |
3034690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 3042948 - 3042789
Alignment:
| Q |
26 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
125 |
Q |
| |
|
||||||||||||||||||| |||| || |||| || ||||| ||| |||||| |||||| || | ||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
3042948 |
acttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtaccaagtggatcatcggcatcaaccagtgagtaactttttggacactgacat |
3042849 |
T |
|
| Q |
126 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacct |
185 |
Q |
| |
|
||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3042848 |
gttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacct |
3042789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 185
Target Start/End: Original strand, 3063557 - 3063682
Alignment:
| Q |
60 |
tctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagc |
159 |
Q |
| |
|
|||||||||||||| ||| ||||||| | |||||| | ||||||||| |||| ||||| ||||| |||| ||||||| ||||||||||||||| ||| |
|
|
| T |
3063557 |
tctggcttgcagctgccatatggatcattaggatcaatcagtgagtactgttttggacactgacattttggtctcttatcatctcccaaagtgcagaagc |
3063656 |
T |
|
| Q |
160 |
tattatatccacaaacaccactacct |
185 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
3063657 |
tattatatccacaaacaccactacct |
3063682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 166
Target Start/End: Original strand, 25125326 - 25125466
Alignment:
| Q |
26 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
125 |
Q |
| |
|
|||||||||||||||| || |||| || |||| |||| ||| ||| |||||| |||||| || ||||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
25125326 |
acttagttcatcttctccacatccttgcatgaagtcttgctcgcaagtaccaagtggatcatcgggatcaaccagtgagtaactttttggacactgacat |
25125425 |
T |
|
| Q |
126 |
gttggcctcttattctctcccaaagtgcagtagctattata |
166 |
Q |
| |
|
||||| ||||||| |||||||||||||| |||||||||| |
|
|
| T |
25125426 |
gttggtctcttatcaactcccaaagtgcagaagctattata |
25125466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University