View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_275 (Length: 243)
Name: NF8912A_low_275
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_275 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 43802388 - 43802596
Alignment:
| Q |
13 |
gatcttggagaccttaagattataccctccgggaccacttgtgccacgcgagtcaacacaagattctacagtgcatggttatttcataaagnnnnnnnca |
112 |
Q |
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| T |
43802388 |
gatcatggagaccttaagattataccctccgggaccacttgtgccacgcgagtcaacacaagattctacagtgcatggttatttcataaagaaaaaaaca |
43802487 |
T |
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| Q |
113 |
agaataattttgaatttatgggcaataggaagagattctgcgatctggtctaataatgctgaagaattctttccagagagattcgtggataaaagtttag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
43802488 |
agaataattttgaatttatgggcaataggaagagattctgcgatctggtctaataatgctgaagaattttttccggagagattcgtggataaaagtttag |
43802587 |
T |
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| Q |
213 |
actaccgcg |
221 |
Q |
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||||||||| |
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| T |
43802588 |
actaccgcg |
43802596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 43812957 - 43813163
Alignment:
| Q |
13 |
gatcttggagaccttaagattataccctccgggaccacttgtgccacgcgagtcaacacaagattctacagtgcatggttatttcataaagnnnnnnnca |
112 |
Q |
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|||| ||||||||||||||||||| ||| | |||||||||||||| |||||||||||| | ||| ||||||| |||||||||||||||||| || |
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| T |
43812957 |
gatcatggagaccttaagattatatcctgcaggaccacttgtgccgcgcgagtcaacagaggatgctacagttcatggttatttcataaagaaaaaaaca |
43813056 |
T |
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| Q |
113 |
agaataattttgaatttatgggcaataggaagagattctgcgatctggtctaataatgctgaagaattctttccagagagattcgtggataaaagtttag |
212 |
Q |
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||| ||||| ||||||| ||||||||||||||||||||| ||| |||||||||||||| |||||||| | |||||||||||| |||||||||| || | |
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| T |
43813057 |
agagtaattgtgaatttgtgggcaataggaagagattctaagatatggtctaataatgccgaagaattttatccagagagatttgtggataaaaacttcg |
43813156 |
T |
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| Q |
213 |
actaccg |
219 |
Q |
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||||||| |
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| T |
43813157 |
actaccg |
43813163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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