View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_276 (Length: 243)
Name: NF8912A_low_276
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_276 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 42709373 - 42709190
Alignment:
| Q |
27 |
acccgtcaaagttaatctctacgactctccaatgtttcttaagcgcaattcagtcttcagctgttgccttcgccatagcaagggacattcagcactggaa |
126 |
Q |
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| T |
42709373 |
acccttcaaagttaatctttacgactctccaatgtttattaagctcaattcagtctttagctgttgccttcgccatagaaagggacattcagcactggaa |
42709274 |
T |
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| Q |
127 |
attgggttggaacgtcaccttcctcgatatagcctatcgtgtaatcctctcaatttgcactggtagggaatttatagccacagg |
210 |
Q |
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| T |
42709273 |
attgggttggaacgtcaccttcctcgctatagcctattgtgtaatcctctcaatttgtgctggtagggaatttatagccacagg |
42709190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 43623294 - 43623449
Alignment:
| Q |
23 |
gactacccgtcaaagttaatctctacgactctccaatgtttcttaagcgcaattcagtcttcagctgttgccttcgccatagcaagggacattcagcact |
122 |
Q |
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|||||||| |||||||| | || ||||||||||||||||||||||||| ||||||| |||| |||| ||||||| ||||||| |||||||||| |||| | |
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| T |
43623294 |
gactacccttcaaagttgagctttacgactctccaatgtttcttaagctcaattcaatctttagctattgccttggccatagaaagggacattgagcagt |
43623393 |
T |
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| Q |
123 |
ggaaattgggttggaacgtcaccttcctcgatatagcctatcgtgtaatcctctca |
178 |
Q |
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| T |
43623394 |
ggaaattgggttggaacgtcagcctcctcgctatagcctattgtgtaaacctctca |
43623449 |
T |
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