View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_277 (Length: 242)

Name: NF8912A_low_277
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_277
NF8912A_low_277
[»] chr1 (3 HSPs)
chr1 (1-134)||(7741564-7741701)
chr1 (14-93)||(34970432-34970511)
chr1 (39-89)||(49765193-49765243)
[»] chr7 (3 HSPs)
chr7 (39-93)||(3215608-3215662)
chr7 (11-72)||(36657218-36657279)
chr7 (64-131)||(36657130-36657197)
[»] chr2 (1 HSPs)
chr2 (39-93)||(17999403-17999457)
[»] chr8 (1 HSPs)
chr8 (39-89)||(38680116-38680166)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 7741564 - 7741701
Alignment:
Q  1 gattcgcacgcaagttttctaacttctcaatgcttctcctaattttactag----aattaagcctatgaagtttaagctgccaaatggaaatacaacaac 96  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  7741564 gattcgtacgcaagttttctaacttctcaatgcttctcctaattttactagctagaattaagcctatgaagtttaagctgccaaatggaaatacaacaac 7741663  T
Q  97 tgtaaatgatgcaggagccgtattatttcagggaagcc 134  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7741664 tgtaaatgatgcaggagccgtattatttcagggaagcc 7741701  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 34970432 - 34970511
Alignment:
Q  14 gttttctaacttctcaatgcttctcctaattttactagaattaagcctatgaagtttaagctgccaaatggaaatacaac 93  Q
    |||||||| ||| |||||  || | ||||||||| || |||||| ||||||||||||||||| |||||||||||||||||    
T  34970432 gttttctagcttttcaataattgttctaattttattaaaattaaacctatgaagtttaagctaccaaatggaaatacaac 34970511  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 49765193 - 49765243
Alignment:
Q  39 ctaattttactagaattaagcctatgaagtttaagctgccaaatggaaata 89  Q
    |||| ||||||| |||||||||||||||||||||||| |||||| ||||||    
T  49765193 ctaactttactataattaagcctatgaagtttaagctaccaaatagaaata 49765243  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 3215662 - 3215608
Alignment:
Q  39 ctaattttactagaattaagcctatgaagtttaagctgccaaatggaaatacaac 93  Q
    ||||||||| || |||||||||||||||||||||||| |||||||||||||||||    
T  3215662 ctaattttattaaaattaagcctatgaagtttaagctaccaaatggaaatacaac 3215608  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 36657279 - 36657218
Alignment:
Q  11 caagttttctaacttctcaatgcttctcctaattttactagaattaagcctatgaagtttaa 72  Q
    ||||||||||||||| ||||||||| || |||||||||| |||||||| |||||||||||||    
T  36657279 caagttttctaacttttcaatgcttttcataattttactggaattaagtctatgaagtttaa 36657218  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 36657197 - 36657130
Alignment:
Q  64 gaagtttaagctgccaaatggaaatacaacaactgtaaatgatgcaggagccgtattatttcagggaa 131  Q
    ||||||||||||| ||||||||||||||||||| |||||| |||| ||| || |||| ||||||||||    
T  36657197 gaagtttaagctgtcaaatggaaatacaacaacagtaaattatgccggaaccatattttttcagggaa 36657130  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 17999457 - 17999403
Alignment:
Q  39 ctaattttactagaattaagcctatgaagtttaagctgccaaatggaaatacaac 93  Q
    |||||||||||| |||||||||||||||||||||||| ||||||| |||||||||    
T  17999457 ctaattttactataattaagcctatgaagtttaagctaccaaatgaaaatacaac 17999403  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 38680116 - 38680166
Alignment:
Q  39 ctaattttactagaattaagcctatgaagtttaagctgccaaatggaaata 89  Q
    |||| ||||||| |||||||||||||||||||||||| |||||| ||||||    
T  38680116 ctaactttactataattaagcctatgaagtttaagctaccaaatagaaata 38680166  T

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