View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_279 (Length: 242)
Name: NF8912A_low_279
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_279 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 340817 - 341054
Alignment:
| Q |
5 |
gtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaa |
104 |
Q |
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| T |
340817 |
gtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaa |
340916 |
T |
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| Q |
105 |
ccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttc |
204 |
Q |
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| T |
340917 |
ccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttc |
341016 |
T |
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| Q |
205 |
aagagaagataattcacaacaaagttgagaaatcattg |
242 |
Q |
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| T |
341017 |
aagagaagataattcacaacaaagttgagaaatcattg |
341054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 336779 - 337016
Alignment:
| Q |
5 |
gtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaa |
104 |
Q |
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||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| ||||||||||| ||| || |
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| T |
336779 |
gtatgctgtaatcacaaacgatccattgaatgttcactacatcatgagcaagaggtttgacaattttgagaaaggtgaaaggtttcgtgaaacgttccaa |
336878 |
T |
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| Q |
105 |
ccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttc |
204 |
Q |
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| T |
336879 |
ccttttggtttaggaattttcactacagattcacatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttc |
336978 |
T |
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| Q |
205 |
aagagaagataattcacaacaaagttgagaaatcattg |
242 |
Q |
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| T |
336979 |
aagagaaaatcattcacaacaaagttgagaaatcattg |
337016 |
T |
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