View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_281 (Length: 242)
Name: NF8912A_low_281
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_281 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 12422946 - 12423151
Alignment:
| Q |
27 |
cctcctctcaatgtgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
126 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12422946 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatcat |
12423045 |
T |
|
| Q |
127 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggcaacaccat |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| |
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| T |
12423046 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgatgtttctggcaccaccat |
12423145 |
T |
|
| Q |
227 |
agtcga |
232 |
Q |
| |
|
||||| |
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|
| T |
12423146 |
cgtcga |
12423151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 8719361 - 8719566
Alignment:
| Q |
27 |
cctcctctcaatgtgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
126 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8719361 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatcat |
8719460 |
T |
|
| Q |
127 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggcaacaccat |
226 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| |
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|
| T |
8719461 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgatgtttctggcaccaccat |
8719560 |
T |
|
| Q |
227 |
agtcga |
232 |
Q |
| |
|
||||| |
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|
| T |
8719561 |
cgtcga |
8719566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 38460345 - 38460550
Alignment:
| Q |
27 |
cctcctctcaatgtgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
126 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
38460345 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatcat |
38460444 |
T |
|
| Q |
127 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggcaacaccat |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||| |
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|
| T |
38460445 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgaagtttctggcaccaccat |
38460544 |
T |
|
| Q |
227 |
agtcga |
232 |
Q |
| |
|
||||| |
|
|
| T |
38460545 |
cgtcga |
38460550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 38459811 - 38459606
Alignment:
| Q |
27 |
cctcctctcaatgtgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
126 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
38459811 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcgtgttgaatctggtgatggtgagcgaggaaacaagtattggaatcat |
38459712 |
T |
|
| Q |
127 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggcaacaccat |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||| |
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|
| T |
38459711 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgaagtttctggcaccaccat |
38459612 |
T |
|
| Q |
227 |
agtcga |
232 |
Q |
| |
|
||||| |
|
|
| T |
38459611 |
cgtcga |
38459606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 30626873 - 30626668
Alignment:
| Q |
27 |
cctcctctcaatgtgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
126 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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|
| T |
30626873 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatctt |
30626774 |
T |
|
| Q |
127 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgtttttggcaacaccat |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| |||||| |
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|
| T |
30626773 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaaatttcaaggaggatgatcttgttgatgtttctggcaccaccat |
30626674 |
T |
|
| Q |
227 |
agtcga |
232 |
Q |
| |
|
||||| |
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|
| T |
30626673 |
cgtcga |
30626668 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 34149794 - 34149913
Alignment:
| Q |
27 |
cctcctctcaatgtgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
126 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| ||| | | |||||||||||||| ||| ||||||| | ||||||||||||||||||||| |
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|
| T |
34149794 |
cctcttctcaatttgtgtaattgcaaaatgaaagaaaaaga-aaaagagaatcatggtga---------tggtgagtgtggaaacaagtattggaatcat |
34149883 |
T |
|
| Q |
127 |
ggatgtcgaattggggatgatgacatttta |
156 |
Q |
| |
|
|| | |||||||||||||| ||||||| |
|
|
| T |
34149884 |
gggtactgaattggggatgatttcatttta |
34149913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 34177330 - 34177211
Alignment:
| Q |
27 |
cctcctctcaatgtgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
126 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| ||| | | |||||||||||||| ||| ||||||| | ||||||||||||||||||||| |
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|
| T |
34177330 |
cctcttctcaatttgtgtaattgcaaaatgaaagaaaaaga-aaaagagaatcatggtga---------tggtgagtgtggaaacaagtattggaatcat |
34177241 |
T |
|
| Q |
127 |
ggatgtcgaattggggatgatgacatttta |
156 |
Q |
| |
|
|| | |||||||||||||| ||||||| |
|
|
| T |
34177240 |
gggtactgaattggggatgatttcatttta |
34177211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 31279146 - 31279094
Alignment:
| Q |
159 |
ggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgt |
211 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||| ||| || |||||||||| |
|
|
| T |
31279146 |
ggtcttcttaggtcgatgtcgttacttttcaaggaagatgatgttgttgatgt |
31279094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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