View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_289 (Length: 239)

Name: NF8912A_low_289
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_289
NF8912A_low_289
[»] chr8 (6 HSPs)
chr8 (28-157)||(9369507-9369636)
chr8 (158-210)||(35033812-35033864)
chr8 (156-210)||(1051982-1052036)
chr8 (157-210)||(28982076-28982127)
chr8 (157-210)||(28987296-28987347)
chr8 (158-210)||(16886010-16886061)
[»] chr7 (16 HSPs)
chr7 (28-157)||(47817941-47818069)
chr7 (157-210)||(8212683-8212736)
chr7 (158-210)||(8195981-8196033)
chr7 (156-210)||(12756977-12757031)
chr7 (158-210)||(12398620-12398672)
chr7 (158-210)||(751180-751232)
chr7 (158-210)||(40921679-40921730)
chr7 (158-210)||(48986703-48986755)
chr7 (156-210)||(40683542-40683596)
chr7 (158-210)||(5186015-5186066)
chr7 (57-157)||(39255163-39255262)
chr7 (151-210)||(13595962-13596020)
chr7 (157-210)||(49151944-49151995)
chr7 (155-210)||(1319116-1319168)
chr7 (158-210)||(49158632-49158682)
chr7 (112-148)||(26049162-26049198)
[»] chr4 (15 HSPs)
chr4 (35-158)||(23668652-23668775)
chr4 (157-210)||(29454105-29454158)
chr4 (158-210)||(3096380-3096432)
chr4 (157-210)||(51930922-51930975)
chr4 (158-210)||(29447422-29447474)
chr4 (157-210)||(3265362-3265415)
chr4 (157-210)||(49748304-49748357)
chr4 (158-210)||(6457488-6457540)
chr4 (158-210)||(26396984-26397036)
chr4 (158-210)||(38637354-38637406)
chr4 (158-210)||(49239591-49239643)
chr4 (157-207)||(11938462-11938512)
chr4 (55-130)||(50124151-50124226)
chr4 (157-210)||(44662431-44662483)
chr4 (158-210)||(44656513-44656564)
[»] chr6 (14 HSPs)
chr6 (158-224)||(18360654-18360720)
chr6 (158-210)||(6928841-6928893)
chr6 (157-210)||(25465216-25465269)
chr6 (158-210)||(6955415-6955467)
chr6 (158-210)||(15299232-15299284)
chr6 (158-210)||(17311013-17311065)
chr6 (157-210)||(25314391-25314444)
chr6 (157-210)||(26201885-26201938)
chr6 (158-210)||(17703524-17703576)
chr6 (158-210)||(15330868-15330920)
chr6 (157-210)||(21894637-21894687)
chr6 (158-210)||(25558687-25558736)
chr6 (158-210)||(1537094-1537145)
chr6 (158-210)||(19215581-19215632)
[»] chr3 (12 HSPs)
chr3 (157-210)||(10383262-10383315)
chr3 (158-210)||(10424053-10424105)
chr3 (158-210)||(3109798-3109850)
chr3 (158-210)||(14843922-14843974)
chr3 (158-210)||(23825584-23825636)
chr3 (158-210)||(14951648-14951700)
chr3 (158-210)||(16413059-16413111)
chr3 (158-210)||(43722848-43722900)
chr3 (158-210)||(50654771-50654822)
chr3 (156-210)||(29494875-29494929)
chr3 (55-130)||(21219129-21219204)
chr3 (77-122)||(31532115-31532160)
[»] scaffold0136 (1 HSPs)
scaffold0136 (155-210)||(391-446)
[»] chr5 (7 HSPs)
chr5 (156-210)||(1110442-1110496)
chr5 (158-210)||(22246995-22247047)
chr5 (158-210)||(38014995-38015046)
chr5 (158-225)||(15462766-15462834)
chr5 (158-225)||(24009324-24009392)
chr5 (158-210)||(10687430-10687481)
chr5 (158-210)||(40009747-40009798)
[»] scaffold1026 (1 HSPs)
scaffold1026 (157-210)||(588-641)
[»] scaffold0126 (1 HSPs)
scaffold0126 (157-210)||(29003-29056)
[»] chr2 (9 HSPs)
chr2 (158-210)||(18979638-18979690)
chr2 (157-210)||(11358979-11359032)
chr2 (158-210)||(36983303-36983355)
chr2 (158-208)||(21606095-21606145)
chr2 (156-210)||(24480366-24480419)
chr2 (158-210)||(20938918-20938970)
chr2 (157-202)||(42553119-42553164)
chr2 (158-210)||(35586736-35586787)
chr2 (158-210)||(23887116-23887166)
[»] chr1 (13 HSPs)
chr1 (156-210)||(31534024-31534078)
chr1 (157-210)||(31550818-31550871)
chr1 (157-210)||(52400180-52400233)
chr1 (158-210)||(26722471-26722523)
chr1 (157-225)||(38906765-38906832)
chr1 (157-207)||(37676748-37676798)
chr1 (158-207)||(37683419-37683468)
chr1 (158-225)||(18419445-18419513)
chr1 (157-210)||(12203966-12204018)
chr1 (155-210)||(27691853-27691905)
chr1 (157-210)||(36210751-36210803)
chr1 (158-210)||(1525607-1525658)
chr1 (158-210)||(36210641-36210692)
[»] scaffold0072 (1 HSPs)
scaffold0072 (158-210)||(62796-62848)
[»] scaffold0276 (1 HSPs)
scaffold0276 (156-210)||(20847-20901)
[»] scaffold0430 (1 HSPs)
scaffold0430 (157-210)||(14779-14832)
[»] scaffold0041 (1 HSPs)
scaffold0041 (158-210)||(51365-51416)
[»] scaffold0137 (1 HSPs)
scaffold0137 (158-210)||(25115-25167)
[»] scaffold0089 (1 HSPs)
scaffold0089 (157-210)||(17281-17333)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 9369507 - 9369636
Alignment:
Q  28 catagagtgtgagaagaataatgaaccctttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttctttgttgcagatgtaatctt 127  Q
    |||| |||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9369507 cataaagtgtgggaagaataatgaactctttaatggttggaaaatttgattttttgttgtaatttgtatgggttgtgttctttgttgcagatgtaatctt 9369606  T
Q  128 ttcatttgaatgtttatgaaaagtgtgaat 157  Q
    ||||||||||||||||||||||||||||||    
T  9369607 ttcatttgaatgtttatgaaaagtgtgaat 9369636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 35033864 - 35033812
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35033864 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 35033812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 1052036 - 1051982
Alignment:
Q  156 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1052036 attgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 1051982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 28982127 - 28982076
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| ||||||||||||||||||  | ||||||||||||||||    
T  28982127 ttgtaacgccctagttatttatttaattaatttt--attatgtggagtatatat 28982076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 28987347 - 28987296
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| ||||||||||||||||||  | ||||||||||||||||    
T  28987347 ttgtaacgccctagttatttatttaattaatttt--attatgtggagtatatat 28987296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 16886010 - 16886061
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  16886010 tgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 16886061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 47818069 - 47817941
Alignment:
Q  28 catagagtgtgagaagaataatgaaccctttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttctttgttgcagatgtaatctt 127  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47818069 cataaagtgtgagaagaagaatgaaccctttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttctttgttgcatatgtaatctt 47817970  T
Q  128 ttcatttgaatgtttatgaaaagtgtgaat 157  Q
    |||||||||||| |||||||||||||||||    
T  47817969 ttcatttgaatg-ttatgaaaagtgtgaat 47817941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 8212683 - 8212736
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8212683 ttgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 8212736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 8195981 - 8196033
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8195981 tgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 8196033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 12756977 - 12757031
Alignment:
Q  156 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  12756977 attgtaacgccctaattatttatttaattaattttaaactatgtggagtatatat 12757031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 12398620 - 12398672
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  12398620 tgtaacgccctagttatttatttaattaattttaaactatgttgagtatatat 12398672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 751232 - 751180
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  751232 tgtaacgccctagttatttatttaattaattttatactatgtggagcatatat 751180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 40921679 - 40921730
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  40921679 tgtaacgccctagttatttatttaatta-ttttaaactatgtggagtatatat 40921730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 48986703 - 48986755
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  48986703 tgtaacgccctagttatttatttaattaattttatactatgtggagcatatat 48986755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 40683542 - 40683596
Alignment:
Q  156 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||    
T  40683542 attgtaacgccctaattatttatttaattaattttatactatgtggagcatatat 40683596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 5186015 - 5186066
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||||||||||||    
T  5186015 tgtaacgccctagttatt-atttaattaattttatactatgtggagtatatat 5186066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 39255163 - 39255262
Alignment:
Q  57 ttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttctttgttgcagatgtaatcttttcatttgaatgtttatgaaaagtgtgaa 156  Q
    ||||| |||||||  |||| ||||| || ||||||| |||||| |||||||||  ||||||||||||| |||||  |||| ||| ||| |||||||||||    
T  39255163 ttaattgttgaaagatttgctttttggtagtaatttttatggggtgtgttcttgattgcagatgtaatattttctcttgagtgtatat-aaaagtgtgaa 39255261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 13596020 - 13595962
Alignment:
Q  151 tgtgaattgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||| |||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  13596020 tgtgatttgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 13595962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 49151995 - 49151944
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| |||||||||||| |||||  | ||||||||||||||||    
T  49151995 ttgtaacgccctagttatttatttaattgatttt--attatgtggagtatatat 49151944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 1319168 - 1319116
Alignment:
Q  155 aattgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||||| ||||||||||||| |||   | ||||||||||||||||    
T  1319168 aattgtaacgccctagttatttatttaattatttt---attatgtggagtatatat 1319116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 49158682 - 49158632
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| |||||||||||| |||||  | ||||||||||||||||    
T  49158682 tgtaacgccctagttatttatttaattgatttt--attatgtggagtatatat 49158632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 26049162 - 26049198
Alignment:
Q  112 ttgcagatgtaatcttttcatttgaatgtttatgaaa 148  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  26049162 ttgcagatgtaatcttttcattttaatggttatgaaa 26049198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 23668652 - 23668775
Alignment:
Q  35 tgtgagaagaataatgaaccctttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttctttgttgcagatgtaatcttttcattt 134  Q
    |||| ||||| |||||||| ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  23668652 tgtgggaagattaatgaactctttaatggttgaaaaaattgattttttgttgtaatttgtatgggttttgttctttgttgcagatgtaatcttttcaatt 23668751  T
Q  135 gaatgtttatgaaaagtgtgaatt 158  Q
    |||||||||| |||||||||||||    
T  23668752 gaatgtttataaaaagtgtgaatt 23668775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 29454105 - 29454158
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29454105 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 29454158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 3096380 - 3096432
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3096380 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 3096432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 51930922 - 51930975
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51930922 ttgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 51930975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 29447422 - 29447474
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29447422 tgtaacgtcctagtgatttatttaattaattttaaactatgtggagtatatat 29447474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 3265362 - 3265415
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  3265362 ttgtaacgccctagttatttatttaattaattttatactatgtggagtatatat 3265415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 49748304 - 49748357
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  49748304 ttgtaacgccctagttatttatttaattaattttatactatgtggagtatatat 49748357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 6457488 - 6457540
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  6457488 tgtaacgccctagttatttatttaattaattgtaaactatgtggagtatatat 6457540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 26397036 - 26396984
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  26397036 tgtaacgccctaattatttatttaattaattttaaactatgtggagtatatat 26396984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 38637354 - 38637406
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  38637354 tgtaacgccctaattatttatttaattaattttaaactatgtggagtatatat 38637406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 49239591 - 49239643
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  49239591 tgtaacgccctagttatttatttaattaattttatactatgtggagtatatat 49239643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 11938512 - 11938462
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtata 207  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  11938512 ttgtaacgccctagttatttatttaattaatttaaaattatgtggagtata 11938462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 50124151 - 50124226
Alignment:
Q  55 ctttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttctttgttgcagatgtaatcttttc 130  Q
    ||||||| |||||||  |||| ||||| || ||||||| |||||| |||||||||  ||||||||||||| |||||    
T  50124151 ctttaattgttgaaagatttgctttttggtagtaatttttatggggtgtgttcttgattgcagatgtaatattttc 50124226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 44662431 - 44662483
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| |||||||||||||| |||  | ||||||||||||||||    
T  44662431 ttgtaacgccctagttatttatttaattaa-tttggattatgtggagtatatat 44662483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 44656513 - 44656564
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| |||||||||||||| |||  | ||||||||||||||||    
T  44656513 tgtaacgccctagttatttatttaattaa-tttggattatgtggagtatatat 44656564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 18360720 - 18360654
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatattattgtatatgatg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18360720 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatattattatatatgatg 18360654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 6928841 - 6928893
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6928841 tgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 6928893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 25465269 - 25465216
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  25465269 ttgtaacgccctagttatttatttaattaattttaaactatgaggagtatatat 25465216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 6955467 - 6955415
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  6955467 tgtaacgccctagttatttatttaattaattttatactatgtggagtatatat 6955415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 15299284 - 15299232
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  15299284 tgtaacgccctaattatttatttaattaattttaaactatgtggagtatatat 15299232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 17311065 - 17311013
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  17311065 tgtaacgccctaattatttatttaattaattttaaactatgtggagtatatat 17311013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 25314391 - 25314444
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  25314391 ttgtaacgccctagttatttatttaattaatttaaaattatgtggagtatatat 25314444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 26201885 - 26201938
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  26201885 ttgtaacgccctagttatttatttaattaatttaaaattatgtggagtatatat 26201938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 17703576 - 17703524
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| |||||||||||||||||| |  ||||||||||||||||    
T  17703576 tgtaacgccctagttatttatttaattaattttgatttatgtggagtatatat 17703524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 15330868 - 15330920
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||| | |||||||||||| |||||||||||| ||||||| ||||    
T  15330868 tgtaacgccctatttatttatttaatttattttaaactatttggagtaaatat 15330920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 21894637 - 21894687
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| |||||||||||| |||||||  ||||||||||||||||    
T  21894637 ttgtaacgccctagttatttatttaatt-attttaa--tatgtggagtatatat 21894687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 25558687 - 25558736
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||||  | ||||||||||||||||    
T  25558687 tgtaacgccctagt-atttatttaattaatttt--attatgtggagtatatat 25558736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 1537094 - 1537145
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  1537094 tgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 1537145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 19215632 - 19215581
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  19215632 tgtaacgccctagttgtttatttaattaa-tttgaagtatgtggagtatatat 19215581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 10383315 - 10383262
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10383315 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 10383262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 10424105 - 10424053
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10424105 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 10424053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 3109850 - 3109798
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3109850 tgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 3109798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 14843922 - 14843974
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14843922 tgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 14843974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 23825584 - 23825636
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23825584 tgtaacgccctggtgatttatttaattaattttaaactatgtggagtatatat 23825636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 14951700 - 14951648
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  14951700 tgtaacgccctagttatttatttaattaatttgaaactatgtggagtatatat 14951648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 16413059 - 16413111
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  16413059 tgtaacgccctagttatttatttaattaatttgaaactatgtggagtatatat 16413111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 43722848 - 43722900
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  43722848 tgtaacgccctaattatttatttaattaattttaaactatgtggagtatatat 43722900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 50654771 - 50654822
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  50654771 tgtaacgccctagttatttatttaatta-ttttaaactatgtggagtatatat 50654822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 29494929 - 29494875
Alignment:
Q  156 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||||| |||||||||||||||||| ||| ||| |||||||||||    
T  29494929 attgtaacgccctagttatttatttaattaatttttaaccatgaggagtatatat 29494875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 21219204 - 21219129
Alignment:
Q  55 ctttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttctttgttgcagatgtaatcttttc 130  Q
    ||||||| |||||||  |||| ||||| || ||||||| |||||| |||||||||  ||||||||||||| |||||    
T  21219204 ctttaattgttgaaagatttgctttttggtagtaatttttatggggtgtgttcttgattgcagatgtaatattttc 21219129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 31532115 - 31532160
Alignment:
Q  77 ttttttgttgtaatttgtatgggttgtgttctttgttgcagatgta 122  Q
    |||||||||||| ||| |||||||||||||||| |||||| |||||    
T  31532115 ttttttgttgtagtttttatgggttgtgttcttggttgcatatgta 31532160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 446 - 391
Alignment:
Q  155 aattgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  446 aattgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 1110442 - 1110496
Alignment:
Q  156 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1110442 attgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 1110496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 22246995 - 22247047
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  22246995 tgtaacgccctagttatttatttaattaatttttaactatgtggagtatatat 22247047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 38015046 - 38014995
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  38015046 tgtaacgccctagttatttatttaatta-ttttaaactatgtggagtatatat 38014995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 15462834 - 15462766
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtata--tattattgtatatgatgt 225  Q
    |||||||||||||| |||||||||||||| ||| || |||||||||||||  ||||||| ||||||||||    
T  15462834 tgtaacgccctagttatttatttaattaa-tttgaattatgtggagtatatgtattattatatatgatgt 15462766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 24009392 - 24009324
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggag--tatatattattgtatatgatgt 225  Q
    ||||||||||||||  ||||||||||||| ||| ||||||||||||  ||||||||||| ||||||||||    
T  24009392 tgtaacgccctagttgtttatttaattaa-tttgaactatgtggagtatatatattattatatatgatgt 24009324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 10687481 - 10687430
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  10687481 tgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 10687430  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 40009747 - 40009798
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  40009747 tgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 40009798  T

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Target: scaffold1026 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 641 - 588
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  641 ttgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 588  T

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Target: scaffold0126 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 29003 - 29056
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29003 ttgtaacgctctagtgatttatttaattaattttaaactatgtggagtatatat 29056  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 18979690 - 18979638
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18979690 tgtaacgccctagttatttatttaattaattttaaactatgtggagtatatat 18979638  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 11358979 - 11359032
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  11358979 ttgtaacgccctagttatttatttaattaatttgaaactatgtggagtatatat 11359032  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 36983303 - 36983355
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  36983303 tgtaacgccctagttatttatttaattaattttaatctatgtggagtatatat 36983355  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 21606145 - 21606095
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatat 208  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  21606145 tgtaacgccctagttatttatttaattaattttaaagtatgtggagtatat 21606095  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 24480366 - 24480419
Alignment:
Q  156 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  24480366 attgtaacgccctagttatttatttaatt-attttaaactatgtggagtatatat 24480419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 20938970 - 20938918
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  20938970 tgtaacgccctagttatttatttaattaatttaaaattatgtggagtatatat 20938918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 42553164 - 42553119
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtgga 202  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  42553164 ttgtaacgccctagttatttatttaattaattttatactatgtgga 42553119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 35586787 - 35586736
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  35586787 tgtaacgccctagttatttatttaatt-attttaaactatgtggagtgtatat 35586736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 23887116 - 23887166
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||||  | ||||||||||||||||    
T  23887116 tgtaacgccctagttatttatttaattaatttt--attatgtggagtatatat 23887166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 31534024 - 31534078
Alignment:
Q  156 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  31534024 attgtaacgccctagttatttatttaattaattttatactatgtggagtatatat 31534078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 31550818 - 31550871
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  31550818 ttgtaacgccctagttatttatttaattaattttatactatgtggagtatatat 31550871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 52400233 - 52400180
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  52400233 ttgtaacgccctaattatttatttaattaattttaaactatgtggagtatatat 52400180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 26722471 - 26722523
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  26722471 tgtaacgccctagttatttatttaattaatttgaaactatatggagtatatat 26722523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 38906765 - 38906832
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatattattgtatatgatgt 225  Q
    ||||||||||||||| |||||||||||||| ||| || ||||||||||||||||| || ||||||||||    
T  38906765 ttgtaacgccctagttatttatttaattaa-tttgaattatgtggagtatatatttttatatatgatgt 38906832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 37676798 - 37676748
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtata 207  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  37676798 ttgtaacgccctagttatttatttaattaatttaaaattatgtggagtata 37676748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 37683468 - 37683419
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtata 207  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  37683468 tgtaacgccctagttatttatttaattaatttaaaattatgtggagtata 37683419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 18419513 - 18419445
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggag--tatatattattgtatatgatgt 225  Q
    ||||||||||||||  | ||||||||||| ||| ||||||||||||  ||||||||||| ||||||||||    
T  18419513 tgtaacgccctagttgtctatttaattaa-tttgaactatgtggagtatatatattattatatatgatgt 18419445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 12204018 - 12203966
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  12204018 ttgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 12203966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 27691853 - 27691905
Alignment:
Q  155 aattgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||||| ||||||||||||| |||   | ||||||||||||||||    
T  27691853 aattgtaacgccctagttatttatttaattatttt---attatgtggagtatatat 27691905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 36210751 - 36210803
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  36210751 ttgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 36210803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 1525607 - 1525658
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  1525607 tgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 1525658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 36210641 - 36210692
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  36210641 tgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 36210692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 62796 - 62848
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  62796 tgtaacgccctagttatttatttaattaattttatactatgtggagtatatat 62848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 20847 - 20901
Alignment:
Q  156 attgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||||| ||||||||||||||||||| |||| |||||||||||||    
T  20847 attgtaacgccctagttatttatttaattaattttatactacgtggagtatatat 20901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 14779 - 14832
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  14779 ttgtaacgccctagttatttatttaattaatttaaaattatgtggagtatatat 14832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 51416 - 51365
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  51416 tgtaacgccctagttatttatttaatta-ttttaaactatgtggagtatatat 51365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 25115 - 25167
Alignment:
Q  158 tgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||| ||||||||||||||||| ||  ||||||||||||||||    
T  25115 tgtaacgccctagttatttatttaattaatttgaatttatgtggagtatatat 25167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 17281 - 17333
Alignment:
Q  157 ttgtaacgccctagtgatttatttaattaattttaaactatgtggagtatatat 210  Q
    |||||||||||||||  ||||||||||||| ||| || ||||||||||||||||    
T  17281 ttgtaacgccctagttgtttatttaattaa-tttgaattatgtggagtatatat 17333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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