View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_300 (Length: 237)
Name: NF8912A_low_300
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_300 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 18446347 - 18446573
Alignment:
| Q |
11 |
atggacatcaattttcaccattcacaaataagtatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18446347 |
atggacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacaattcaacttaatgcttaaaa |
18446446 |
T |
|
| Q |
111 |
tgaccatagagagttccaagtgaagagaagatgtatagggattgacatattcatatcacacaaagcctcatcgcacagattgagcaacttacgtcattac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18446447 |
tgaccatagagagttccaagtgaagagaagatgtatagggattgacagaatcatatcacacaaagcctcatcgcacagattgagcaacttacgtcattac |
18446546 |
T |
|
| Q |
211 |
aaaagtcctcttcctctgcctattcat |
237 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
18446547 |
aaaagtcctcttcctctgcctattcat |
18446573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 36404125 - 36404338
Alignment:
| Q |
25 |
tcaccattcacaaataagtatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaatgaccatagagagt |
124 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
36404125 |
tcaccattcacaaataaatatgcactccctccggtcttgaacaatataatttttttaccaaatactgttcaacttaatgcttaaaatgaccatagggagt |
36404224 |
T |
|
| Q |
125 |
tccaagtgaagagaagatgtatagggattgacatattcatatcacac-aaagcctcatcgcacagattgagcaacttacgtcattacaaaagtcctcttc |
223 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36404225 |
tccaagtggagagaagatgtatagggattgacagaatcatatcacacaaaagcctcatcgcatagattgagcaacttacgtcattacaaaagtcctcttc |
36404324 |
T |
|
| Q |
224 |
ctctgcctattcat |
237 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36404325 |
ctctgcctattcat |
36404338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 18578900 - 18578863
Alignment:
| Q |
15 |
acatcaattttcaccattcacaaataagtatgcactcc |
52 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
18578900 |
acatcaattttcaccattcacaaataaatatgtactcc |
18578863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 55353517 - 55353290
Alignment:
| Q |
11 |
atggacatcaattttcaccattcacaaataagtatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
55353517 |
atggacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataatttttttaccaaatacagttcaacttaatgcttaaaa |
55353418 |
T |
|
| Q |
111 |
tgaccatagagagttccaagtgaagagaagatgtatagggattgacatattcatatcacac-aaagcctcatcgcacagattgagcaacttacgtcatta |
209 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55353417 |
tgaccatagggagtttcaaatgaagagaagatgtatagggattgacagaatcatatcacacaaaagcctcatcgcacagattgagcaacttacgtcatta |
55353318 |
T |
|
| Q |
210 |
caaaagtcctcttcctctgcctattcat |
237 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
55353317 |
caaaagtcttcttcctctgcctattcat |
55353290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 29607414 - 29607643
Alignment:
| Q |
11 |
atggacatcaattttcaccattcacaaataagtatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| ||||||| ||||||||| ||||||||||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
29607414 |
atggacatcaattttcaccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgagcaaatacagttcaacttt-tgcttaaaa |
29607512 |
T |
|
| Q |
111 |
---tgaccatagagagttccaagtgaagagaagatgtatagggattgacatattcatatcacacaaa-gcctcatcgcacagattgagcaacttacgtca |
206 |
Q |
| |
|
|||||| || ||||||||||||| ||| ||||||||||||||||||| | |||||||| ||||| | | ||||| | |||||||||||||||||| |
|
|
| T |
29607513 |
aattgaccacagggagttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacgtca |
29607612 |
T |
|
| Q |
207 |
ttacaaaagtcctcttcctctgcctattcat |
237 |
Q |
| |
|
|||||| ||||||||||||||| | |||||| |
|
|
| T |
29607613 |
ttacaacagtcctcttcctctgtccattcat |
29607643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 14906158 - 14906121
Alignment:
| Q |
15 |
acatcaattttcaccattcacaaataagtatgcactcc |
52 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
14906158 |
acatcaattttcaccattcacaaataaatatgtactcc |
14906121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 13674233 - 13674274
Alignment:
| Q |
11 |
atggacatcaattttcaccattcacaaataagtatgcactcc |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
13674233 |
atggacatcaattttcaccattcacaaataaatatgtactcc |
13674274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University