View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_301 (Length: 237)
Name: NF8912A_low_301
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_301 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 7740858 - 7741083
Alignment:
| Q |
12 |
tgttgcatggagtgtacaaagatgtacgagaataaaggggatccatgtgacatcttccctaccaatattggagttttgggagagattgcagaaaatacaa |
111 |
Q |
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| T |
7740858 |
tgttgcatgggatgtacaaagatgtacgagaataaagggtatccatgtgacatcttccctactaatattggtgttttgggagagattgcacaaaatacaa |
7740957 |
T |
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| Q |
112 |
catgcctcacacaattttgtggcatttgagaatatggtgaaaaagtggccacaattagaaattgaaaaggaattaaaaaatagccagagtgcagctcaca |
211 |
Q |
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| T |
7740958 |
catgcctcacacaattttgtggcatttgagaatatggtgaaaaagtggcgacaattagaaattgaaaaggaattaaaaaatagctagagtgcacctcttc |
7741057 |
T |
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| Q |
212 |
ggctatgtatggagtgtaggagagtg |
237 |
Q |
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| T |
7741058 |
ggctatgtttggattgatggagagtg |
7741083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 46205370 - 46205434
Alignment:
| Q |
133 |
gcatttgagaatatggtgaaaaagtggccacaattagaaattgaaaaggaattaaaaaatagcca |
197 |
Q |
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| T |
46205370 |
gcatttgaaaaaatggtaaacaagtggcgacaattagagactgaaaaggaattcaaaaatagcca |
46205434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 18895337 - 18895218
Alignment:
| Q |
86 |
tttgggagagattgcagaaaatacaacatgcctcacacaatttt--gtggcatttgagaatatggtgaaaaagtggccacaattagaaattgaaaaggaa |
183 |
Q |
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| T |
18895337 |
tttgggagatattgcaggaaaaacaacatgtctcacacaatttttagtggcatttgagaagatggtgagaaggtggcgacaattagaggttgagaacgaa |
18895238 |
T |
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| Q |
184 |
ttaaaaaatagccagagtgc |
203 |
Q |
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| T |
18895237 |
ttcaaaaatagtcagagtgc |
18895218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 33870203 - 33870249
Alignment:
| Q |
130 |
gtggcatttgagaatatggtgaaaaagtggccacaattagaaattga |
176 |
Q |
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| T |
33870203 |
gtggcatttgagaaaatggtgaaaaagtggcgacaattagaagttga |
33870249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 25029793 - 25029729
Alignment:
| Q |
133 |
gcatttgagaatatggtgaaaaagtggccacaattagaaattgaaaaggaattaaaaaatagcca |
197 |
Q |
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| T |
25029793 |
gcatttgaaaaaatggtaaacaagtggcgacaattagagactgaaaaggaattcaaaaatagcca |
25029729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 52286190 - 52286126
Alignment:
| Q |
133 |
gcatttgagaatatggtgaaaaagtggccacaattagaaattgaaaaggaattaaaaaatagcca |
197 |
Q |
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| T |
52286190 |
gcatttgaaaaaatggtaaacaagtggcgacaattagagactgaaaaggaattcaaaaatagcca |
52286126 |
T |
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