View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8912A_low_303 (Length: 236)

Name: NF8912A_low_303
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8912A_low_303
NF8912A_low_303
[»] chr7 (9 HSPs)
chr7 (23-235)||(23983290-23983502)
chr7 (149-236)||(36449287-36449373)
chr7 (101-204)||(9107308-9107410)
chr7 (177-236)||(22567912-22567970)
chr7 (20-63)||(36449164-36449207)
chr7 (31-117)||(8745244-8745330)
chr7 (28-236)||(3478440-3478647)
chr7 (131-236)||(9427902-9428007)
chr7 (191-236)||(28534311-28534355)
[»] chr2 (16 HSPs)
chr2 (5-230)||(10173368-10173593)
chr2 (23-196)||(16952207-16952380)
chr2 (23-196)||(17022872-17023045)
chr2 (23-196)||(17060178-17060351)
chr2 (92-213)||(20572226-20572346)
chr2 (31-117)||(34230292-34230378)
chr2 (156-236)||(12343037-12343116)
chr2 (160-236)||(27879935-27880011)
chr2 (186-235)||(4974992-4975042)
chr2 (186-235)||(4992900-4992950)
chr2 (177-236)||(13699086-13699144)
chr2 (132-235)||(27740153-27740255)
chr2 (31-117)||(7696053-7696139)
chr2 (178-236)||(22884934-22884991)
chr2 (33-103)||(41086715-41086785)
chr2 (161-236)||(41086572-41086648)
[»] chr1 (13 HSPs)
chr1 (23-232)||(16577344-16577554)
chr1 (34-236)||(41126272-41126462)
chr1 (160-236)||(38548859-38548934)
chr1 (150-236)||(16148987-16149073)
chr1 (31-117)||(16147649-16147735)
chr1 (160-236)||(38544538-38544613)
chr1 (156-236)||(32882584-32882665)
chr1 (31-117)||(6583120-6583206)
chr1 (31-117)||(31290923-31291009)
chr1 (149-228)||(10785252-10785330)
chr1 (177-234)||(17033810-17033866)
chr1 (156-184)||(24659146-24659174)
chr1 (132-208)||(49820311-49820387)
[»] chr5 (8 HSPs)
chr5 (14-229)||(17853861-17854073)
chr5 (84-236)||(26045746-26045901)
chr5 (149-233)||(33258665-33258750)
chr5 (177-236)||(39183986-39184044)
chr5 (149-236)||(14302226-14302314)
chr5 (160-208)||(24072094-24072142)
chr5 (14-62)||(24072226-24072274)
chr5 (157-205)||(39024259-39024306)
[»] chr6 (5 HSPs)
chr6 (23-235)||(32935126-32935337)
chr6 (31-114)||(20701710-20701793)
chr6 (156-236)||(20701583-20701664)
chr6 (97-205)||(21266263-21266369)
chr6 (132-208)||(33968443-33968518)
[»] chr4 (10 HSPs)
chr4 (101-205)||(12296322-12296426)
chr4 (28-231)||(19673188-19673392)
chr4 (28-231)||(19815009-19815213)
chr4 (149-236)||(22810943-22811029)
chr4 (149-236)||(48098546-48098632)
chr4 (149-236)||(49747739-49747826)
chr4 (156-236)||(38637016-38637095)
chr4 (31-117)||(49528163-49528249)
chr4 (160-205)||(46487477-46487522)
chr4 (164-236)||(20632268-20632339)
[»] chr3 (9 HSPs)
chr3 (31-174)||(39021122-39021267)
chr3 (5-208)||(823246-823450)
chr3 (149-208)||(14879648-14879708)
chr3 (31-117)||(25647777-25647863)
chr3 (156-236)||(14194152-14194229)
chr3 (136-181)||(23328188-23328233)
chr3 (158-233)||(28937498-28937574)
chr3 (192-236)||(32010016-32010060)
chr3 (157-236)||(33143733-33143813)
[»] scaffold1613 (1 HSPs)
scaffold1613 (160-236)||(817-892)
[»] chr8 (5 HSPs)
chr8 (156-236)||(10248349-10248430)
chr8 (115-196)||(17720545-17720626)
chr8 (31-117)||(17656906-17656992)
chr8 (149-236)||(12197857-12197945)
chr8 (149-236)||(12442285-12442373)
[»] scaffold0063 (1 HSPs)
scaffold0063 (31-236)||(58218-58427)
[»] scaffold0050 (1 HSPs)
scaffold0050 (149-236)||(36920-37005)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 23983290 - 23983502
Alignment:
Q  23 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 122  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||||||| ||||||||| ||||||| ||||| |||||||    
T  23983290 tttttgtgttctttcggtgtatcggaggttgagaggtggtgacagttgaatgatctttcgaatatgagcttttcggatctggttcagctttgatgatgag 23983389  T
Q  123 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtct 222  Q
    || ||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| |||| ||||||| |||||    
T  23983390 gaccgagaatttcatttagagcggtcttcttttggggtgagtagtgatgatgggtagttatgtatatcgtttttcagtggttgttttcgtgaatgagtct 23983489  T
Q  223 gttttaggtggtg 235  Q
    |||||||||||||    
T  23983490 gttttaggtggtg 23983502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 36449287 - 36449373
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||| | ||||||||||||||||| ||||||||| |||||||||||||| ||| |||| ||||||  ||||| |||||||||||||    
T  36449287 ttcttttgtggtgagtagtgacgatgagtggttatggatatcgtttttcagcggttgttt-cgtgaagtagtctattttaggtggtga 36449373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 9107308 - 9107410
Alignment:
Q  101 gtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagt 200  Q
    |||| |||||||||||||||||||| | |  |||||||||||| ||  || ||| ||| ||||||||| ||||||||||||||| |||||||||| || |    
T  9107308 gtggctcaactttggtgatgaggatgg-gtgtttcatttagaggggagttattttgggatgagtagtggcgatgggtggttatggatatcgttttccaat 9107406  T
Q  201 ggtc 204  Q
    ||||    
T  9107407 ggtc 9107410  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 22567970 - 22567912
Alignment:
Q  177 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||||| ||| |||||||||||||| |||| ||||||  |||||||||||||||||||    
T  22567970 tggttatggataccgtttttcagtggttgttt-cgtgaaagagtctgttttaggtggtga 22567912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 36449164 - 36449207
Alignment:
Q  20 ttatttttgtgttctttcggtgtatcggaggttgagaggtggtg 63  Q
    ||||||| || ||||||||||| |||||||||||||||||||||    
T  36449164 ttattttggttttctttcggtggatcggaggttgagaggtggtg 36449207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 8745244 - 8745330
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||| ||||||||| ||||||| |||  ||| | ||||| ||||  ||| ||| ||||||||||||| ||| ||||||||    
T  8745244 ttctttcggtggatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagcttttcggatgtggctcagctttggtg 8745330  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 236
Target Start/End: Original strand, 3478440 - 3478647
Alignment:
Q  28 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 127  Q
    |||||||||||||| ||||||| | ||||||||| |  ||| ||||||| ||||| || |||  ||||| ||  ||| | | |||||||| ||||||  |    
T  3478440 gtgttctttcggtggatcggagatcgagaggtggcggaagctgaatgatctttcggatgtgaacttttctgagttggctaagctttggtgttgaggactg 3478539  T
Q  128 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgttt 226  Q
     || ||| |||| |||  || |||||| ||||||||||||||||| || |||| ||| |||||| |||| |||| ||||| | |||||| | ||||||||    
T  3478540 ggagtttaattttgaggagtgttcttt-ggggtgagtagtgacgacggttggtgatggatatcgcttttacagt-gtcgtattcgtgaagacgtctgttt 3478637  T
Q  227 taggtggtga 236  Q
     || ||||||    
T  3478638 gagttggtga 3478647  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 9428007 - 9427902
Alignment:
Q  131 atttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttagg 230  Q
    ||||||||||||| | |  | ||| ||| ||||||||||||| ||||||||||| ||||| ||||| |||||| || | ||||||  | | |||||||||    
T  9428007 atttcatttagagggatgctatttagggatgagtagtgacgacgggtggttatggatatcattttttagtggttgtcttcgtgaaagaatttgttttagg 9427908  T
Q  231 tggtga 236  Q
    | ||||    
T  9427907 tagtga 9427902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 28534355 - 28534311
Alignment:
Q  191 gtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||||||||||||||| ||||||  |||||||||||||||||||    
T  28534355 gtttttcagtggtcgttt-cgtgaaagagtctgttttaggtggtga 28534311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 10173593 - 10173368
Alignment:
Q  5 agtttggtgttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtgg 104  Q
    |||||||| ||||| || | || |||||||||||||| ||||||||| |||||||||||  ||  ||||||| ||| ||||||||| |||||||||||||    
T  10173593 agtttggttttgggcttttgttggtgttctttcggtgaatcggaggtcgagaggtggtggaagttgaatgatcttttgaatatgagcttttcggatgtgg 10173494  T
Q  105 ttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggt 203  Q
     ||| |||||||| ||||||  |||| ||| |||| |||  || |||||| ||||||||||||||||||| |||||  |||||||||||||| |||| ||    
T  10173493 ctcagctttggtgttgaggactgagagtttaattttgaggagtattcttt-ggggtgagtagtgacgatgagtggtgttgtatatcgtttttacagtagt 10173395  T
Q  204 cgtttacgtgaataagtctgttttagg 230  Q
    ||||| | |||| | ||||||||||||    
T  10173394 cgttttcatgaagacgtctgttttagg 10173368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 16952380 - 16952207
Alignment:
Q  23 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 122  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  16952380 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 16952281  T
Q  123 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 196  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| |||||    
T  16952280 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatctttttt 16952207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 17023045 - 17022872
Alignment:
Q  23 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 122  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  17023045 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 17022946  T
Q  123 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 196  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| |||||    
T  17022945 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatctttttt 17022872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 17060351 - 17060178
Alignment:
Q  23 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 122  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  17060351 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 17060252  T
Q  123 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 196  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| |||||    
T  17060251 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatctttttt 17060178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 20572226 - 20572346
Alignment:
Q  92 ttttcggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg 191  Q
    ||||||||| ||||| | |||| ||||||||||  |||| |||||||||||| ||| |||||| | ||||||||||| |||| |||||||||| ||||||    
T  20572226 ttttcggatatggtttagctttagtgatgaggaatgagagtttcatttagaggggtgttcttttgaggtgagtagtggcgat-ggtggttatggatatcg 20572324  T
Q  192 tttttcagtggtcgtttacgtg 213  Q
    ||||||||||||||||| ||||    
T  20572325 tttttcagtggtcgttttcgtg 20572346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 34230292 - 34230378
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||| |||||||||||||||||||||  ||| ||||||| |||| |||| ||| ||||| ||||||| ||||||||||||    
T  34230292 ttctttcggtggatcggaggttgagaggtggtggaagctgaatgatctttcaaataagagcttttcagatgtggctcaactttggtg 34230378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 12343037 - 12343116
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    ||||||||||||||||||| ||||||  | ||||||||||| ||| |||||||| ||||||  |||||||||||||||||||    
T  12343037 ggggtgagtagtgacgatgagtggtt--ggatatcgtttttacagaggtcgttttcgtgaaggagtctgttttaggtggtga 12343116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 27880011 - 27879935
Alignment:
Q  160 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||||||  |||| ||||||||| || ||||||||||| |||||||| | ||||  |||||||||||||||||||    
T  27880011 tgagtagtggtgatgagtggttatggatttcgtttttcagaggtcgttttcctgaaggagtctgttttaggtggtga 27879935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 4974992 - 4975042
Alignment:
Q  186 atatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtg 235  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  4974992 atatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtg 4975042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 4992900 - 4992950
Alignment:
Q  186 atatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtg 235  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  4992900 atatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtg 4992950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 13699144 - 13699086
Alignment:
Q  177 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||||||||| ||||||||||||||||||| ||| ||  ||| |||||||||||||||    
T  13699144 tggttatgtataccgtttttcagtggtcgttt-cgtaaaagagtgtgttttaggtggtga 13699086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 27740153 - 27740255
Alignment:
Q  132 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggt 231  Q
    |||||||||||| ||| || ||  ||| ||||||||| ||| | ||||||||| |||||||| ||||||||| |||| ||||||  ||| ||| ||||||    
T  27740153 tttcatttagaggggtgttattctgggatgagtagtggcgacgagtggttatgaatatcgttcttcagtggtagttt-cgtgaaggagtttgtattaggt 27740251  T
Q  232 ggtg 235  Q
    ||||    
T  27740252 ggtg 27740255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 7696053 - 7696139
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||| |||| |||| | |||||||||  ||| ||||||| ||||| ||| ||| |||  |||||||| ||||||||||||    
T  7696053 ttctttcggtggatcgaaggtcgggaggtggtggaagctgaatgatctttcggataggagatttgaggatgtggctcaactttggtg 7696139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 22884991 - 22884934
Alignment:
Q  178 ggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    ||||||| || |||||| ||||||||||||| ||||||  |||||||||||||||||||    
T  22884991 ggttatggatttcgtttgtcagtggtcgttt-cgtgaaggagtctgttttaggtggtga 22884934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 41086785 - 41086715
Alignment:
Q  33 ctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtg 103  Q
    ||||||||| ||||||||| |||||||||||  ||| ||||||| ||||| ||| ||| |||| |||||||    
T  41086785 ctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcggataagagctttttggatgtg 41086715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 41086648 - 41086572
Alignment:
Q  161 gagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    ||||||||||||||||||||  || |||||||||||  |||||||| || ||| ||   ||||||||||||||||||    
T  41086648 gagtagtgacgatgggtggtattggatatcgtttttagagtggtcgctttcgttaaggggtctgttttaggtggtga 41086572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 16577344 - 16577554
Alignment:
Q  23 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 122  Q
    |||||| |||||||||||  || ||||||||||||||||||  ||| ||||||| ||| ||||| ||| ||||||||||||| |||||||||||||||      
T  16577344 tttttgcgttctttcggtagattggaggttgagaggtggtggaagctgaatgatctttggaataggagcttttcggatgtggctcaactttggtgatggt 16577443  T
Q  123 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatc-gtttttcagtggtcgtttacgtgaataagtc 221  Q
    ||  || | |||| ||||||| ||| |||||| || |||||||| |||||||  |||||||| |||||  ||||| ||||||||||| ||||||  ||||    
T  16577444 gactgaaagtttcttttagaggggtgttcttttggagtgagtagggacgatgaatggttatggatatcattttttgagtggtcgttttcgtgaaagagtc 16577543  T
Q  222 tgttttaggtg 232  Q
    |||||||||||    
T  16577544 tgttttaggtg 16577554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 41126462 - 41126272
Alignment:
Q  34 tttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgagaatt 133  Q
    |||||||| || ||||||||||||||| ||  ||| ||| ||| ||| | ||| ||| ||||| ||||||| |||||||||||||||||||  |||| ||    
T  41126462 tttcggtggattggaggttgagaggtgctggaagctgaacgatcttttggataggagcttttcagatgtggatcaactttggtgatgaggactgagagtt 41126363  T
Q  134 tcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtgg-tcgtttacgtgaataagtctgttttaggtg 232  Q
    ||||||||||             |||||||||||||||||||||||| ||| |||||||||| |||||| | |||| |||||||  ||||||||||||||    
T  41126362 tcatttagag-------------gggtgagtagtgacgatgggtggtgatggatatcgttttacagtggtttgttttcgtgaatgcgtctgttttaggtg 41126276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 38548934 - 38548859
Alignment:
Q  160 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||  |||||||||||||||||||    
T  38548934 tgagtagtgacgatgggtggttatgaatatcgtttttcagtgatcgttt-cgtgaaagagtctgttttaggtggtga 38548859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 16148987 - 16149073
Alignment:
Q  150 tctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    ||||| ||||||||||||||||||||||| || || ||||||||||||||| ||||||||| ||||   ||||||||||||||||||    
T  16148987 tctttgggggtgagtagtgacgatgggtgcttttggatatcgtttttcagtagtcgtttacatgaaggtgtctgttttaggtggtga 16149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 16147649 - 16147735
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||  ||||||||| |||||||||||| ||  ||||||| ||||  ||||||| ||||||||||||| ||| ||||||||    
T  16147649 ttctttcggtagatcggaggtggagaggtggtgaaagttgaatgatctttcagatatgagcttttcggatgtggctcagctttggtg 16147735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 38544613 - 38544538
Alignment:
Q  160 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    ||||||||||||||| ||||||||| |||||||||| ||||| ||  || ||||||  |||||||||||||||||||    
T  38544613 tgagtagtgacgatgagtggttatggatatcgttttccagtgatc-attccgtgaaagagtctgttttaggtggtga 38544538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 32882584 - 32882665
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgt-ttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||||||||||||||||||||||  || ||||||| ||| ||||| |||||| ||||||  |||| |||||||| |||||    
T  32882584 ggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcgttttcgtgaaggagtcagttttaggcggtga 32882665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 6583206 - 6583120
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||| ||||||||| |||||||||||  ||| || |||| ||||  ||| ||| |||||||||| || ||| ||||||||    
T  6583206 ttctttcggtgaatcggaggtcgagaggtggtggaagctgattgatctttcagataggagcttttcggatgcggctcagctttggtg 6583120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 31291009 - 31290923
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||| ||||||||| |||||||||||  ||  |  |||| ||||| ||| ||| ||||||||||||| ||| ||||||||    
T  31291009 ttctttcggtggatcggaggtcgagaggtggtggaagttgcttgatctttcggataggagcttttcggatgtggctcagctttggtg 31290923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 10785330 - 10785252
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgtttta 228  Q
    ||||| |||| |||||||||||||||||||||  || |||||| ||||||||  ||||||| ||||||  |||||||||||    
T  10785330 ttcttgcgggatgagtagtgacgatgggtggt--tggatatcgttttttcagatgtcgttttcgtgaaggagtctgtttta 10785252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 17033810 - 17033866
Alignment:
Q  177 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggt 234  Q
    |||||||||||| ||||||| ||||||||||| ||||||  ||| |||||||||||||    
T  17033810 tggttatgtataccgtttttaagtggtcgttt-cgtgaaagagtatgttttaggtggt 17033866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 24659146 - 24659174
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatg 184  Q
    |||||||||||||||||||||||||||||    
T  24659146 ggggtgagtagtgacgatgggtggttatg 24659174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 49820311 - 49820387
Alignment:
Q  132 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgttt 208  Q
    |||||||||||| |||  | ||| ||| || || ||| ||| ||||||||||| |||||||||||||||| ||||||    
T  49820311 tttcatttagaggggtgatattttgggatgtgtggtggcgacgggtggttatggatatcgtttttcagtgctcgttt 49820387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 17854073 - 17853861
Alignment:
Q  14 ttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaacttt 113  Q
    ||||| |||||||  ||||||||||||| | | || ||||||||||||||  ||  ||||||| ||| ||||||||  ||||||||||||| ||| || |    
T  17854073 ttgggcttattttaatgttctttcggtggacctgaagttgagaggtggtggaagttgaatgatctttagaatatgac-ttttcggatgtggctcagctat 17853975  T
Q  114 ggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtg 213  Q
    |||||||||||| | |  ||||||||||||  |||| |||| |||||||||||||  |||||||||||||| |||||||||||||||| |||||| |||     
T  17853974 ggtgatgaggattg-gtgtttcatttagaggtgtctacttttggggtgagtagtggtgatgggtggttatggatatcgtttttcagtgatcgttt-cgta 17853877  T
Q  214 aataagtctgttttag 229  Q
    ||  ||||||||||||    
T  17853876 aaggagtctgttttag 17853861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 236
Target Start/End: Complemental strand, 26045901 - 26045746
Alignment:
Q  84 atatgaggttttcggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctt--tcggggtgagtagtgacgatgggtggtt 181  Q
    ||||||| |||||||| |||  |||||||||||| | ||||| |||| ||| |||| ||| ||| || ||  | ||||||||||||||||||||| |||     
T  26045901 atatgagcttttcggaggtgactcaactttggtgtttaggattgagagtttaattttgaggggtgtttttctttggggtgagtagtgacgatgggaggtg 26045802  T
Q  182 atgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
     || || |||||||| | |||||| ||| | |||| ||||||||||||||||||||    
T  26045801 ttggatttcgtttttaccgtggtcattttcatgaagaagtctgttttaggtggtga 26045746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 33258750 - 33258665
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtgg 233  Q
    |||||| ||||||||||||| |||||| ||||  || ||||||||||| ||||||||| || |||||| |  ||||||||||||||    
T  33258750 ttctttaggggtgagtagtggcgatggatggtattggatatcgtttttacagtggtcgctttcgtgaagagatctgttttaggtgg 33258665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 39184044 - 39183986
Alignment:
Q  177 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||||| ||| ||||||||||||||||||| |||||   |||||||||||||||||||    
T  39184044 tggttatggataccgtttttcagtggtcgttt-cgtgatagagtctgttttaggtggtga 39183986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 14302314 - 14302226
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||| ||| |||||||||||||  ||||||  || ||||||||||| || ||||||||| || |||  | |||||||||||||||||    
T  14302314 ttctttggggatgagtagtgacgacaggtggtgttggatatcgtttttacattggtcgttttcgcgaaggaatctgttttaggtggtga 14302226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 24072142 - 24072094
Alignment:
Q  160 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgttt 208  Q
    ||||||||||||||||||| | ||  ||||||||||| |||||||||||    
T  24072142 tgagtagtgacgatgggtgatcatagatatcgttttttagtggtcgttt 24072094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 24072274 - 24072226
Alignment:
Q  14 ttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggt 62  Q
    |||||||| |||| |||||||||||||| | |||||||||| |||||||    
T  24072274 ttggggtttttttggtgttctttcggtggaccggaggttgaaaggtggt 24072226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 39024306 - 39024259
Alignment:
Q  157 gggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcg 205  Q
    |||||||||||||||||| ||| ||||| ||||||||||||| ||||||    
T  39024306 gggtgagtagtgacgatgagtg-ttatggatatcgtttttcaatggtcg 39024259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 32935337 - 32935126
Alignment:
Q  23 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 122  Q
    |||| ||||||||||||||  ||  |||||| |||||||||  ||| | ||||| ||||||| ||||| |||||||||||   ||| |||||||||||||    
T  32935337 ttttagtgttctttcggtggttcaaaggttgggaggtggtggaagctgcatgatctttcgaacatgagtttttcggatgtaactcagctttggtgatgag 32935238  T
Q  123 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtct 222  Q
     |  | || |||||||||||| | | || ||| ||||| |||||||| |||||||||||||||||||||||||| || || ||||| ||| ||  |||||    
T  32935237 cactgtgagtttcatttagagggatgtttttt-ggggtcagtagtgatgatgggtggttatgtatatcgtttttgagggggcgttttcgttaaggagtct 32935139  T
Q  223 gttttaggtggtg 235  Q
     ||||||||||||    
T  32935138 attttaggtggtg 32935126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 20701793 - 20701710
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttg 114  Q
    ||||||||||| ||||||||| ||||||| |||  ||| ||||||| ||||| ||| ||| |||||| |||||| |||||||||    
T  20701793 ttctttcggtggatcggaggtcgagaggtagtggaagctgaatgatctttcggataggagcttttcgaatgtggctcaactttg 20701710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 20701664 - 20701583
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||||||||||||||||||| ||  || ||||||||||| ||||||| | || |||||||  ||||||| ||||||||||    
T  20701664 ggggtgagtagtgacgatgggtagtattggatatcgtttttacagtggttgctttcgtgaatgggtctgttataggtggtga 20701583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 21266263 - 21266369
Alignment:
Q  97 ggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 196  Q
    |||||||| |||  ||||||| ||||||| |||  |||| |||| | |||| ||| || |||||||||||||||||| ||| ||| || || ||||||||    
T  21266263 ggatgtggctcagttttggtgttgaggattgagt-tttcttttacaacggtgttcctttggggtgagtagtgacgat-ggttgttctggatgtcgttttt 21266360  T
Q  197 cagtggtcg 205  Q
    |||||||||    
T  21266361 cagtggtcg 21266369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 33968518 - 33968443
Alignment:
Q  132 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgttt 208  Q
    |||||||||||| ||| || ||| ||| |||||||||| ||||  |||||||| ||| | |||||||||||||||||    
T  33968518 tttcatttagaggggtgttattttgggatgagtagtgatgatgc-tggttatggataccatttttcagtggtcgttt 33968443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 12296322 - 12296426
Alignment:
Q  101 gtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagt 200  Q
    |||| ||||||| |||||||||||  |||  |||||||||||| ||| || ||| ||| ||||||||| ||||||||||||||| |||||||||||||||    
T  12296322 gtggctcaacttaggtgatgaggacggagtgtttcatttagaggggtgttattttgggatgagtagtggcgatgggtggttatggatatcgtttttcagt 12296421  T
Q  201 ggtcg 205  Q
    |||||    
T  12296422 ggtcg 12296426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 19673188 - 19673392
Alignment:
Q  28 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 127  Q
    |||||||||||||| ||||  ||| || || |||||  |||  |||||||||| | ||||||  ||||||||||||| | |||||||||| ||||||  |    
T  19673188 gtgttctttcggtggatcgacggtcgatagatggtggaagctaaatgatattttggatatgaacttttcggatgtggctaaactttggtgttgaggactg 19673287  T
Q  128 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgttt 226  Q
    ||| ||| |||| |||  || |||||| ||||||||||||||||| || ||||  || |||| | |||| |||||||| ||| |||||| | ||||||||    
T  19673288 agagtttaattttgaggagtgttctttgggggtgagtagtgacgacggatggtgttggatattgcttttacagtggtcattttcgtgaagacgtctgttt 19673387  T
Q  227 taggt 231  Q
     ||||    
T  19673388 gaggt 19673392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 19815213 - 19815009
Alignment:
Q  28 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 127  Q
    |||||||||||||| | ||||||| ||||| |||||  |||  |||||| ||||| ||| ||  ||||| ||||||| | |||||||||| ||||||  |    
T  19815213 gtgttctttcggtggaccggaggtcgagagatggtggaagctaaatgatctttcggataggaacttttccgatgtggctaaactttggtgttgaggactg 19815114  T
Q  128 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttt 226  Q
    ||| ||| || | |||  || |||||| ||||||||||||||| | || ||||  || ||||| ||||| | |||||| ||| |||||| | ||||||||    
T  19815113 agagtttaatcttgagaagtgttctttgggggtgagtagtgacaacggatggtattggatatcatttttaccgtggtcattttcgtgaagacgtctgttt 19815014  T
Q  227 taggt 231  Q
     ||||    
T  19815013 gaggt 19815009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 22811029 - 22810943
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||| |||||||||||||||||||| ||||   | ||||||||||| ||||||||| || ||||||  ||||||||||||| |||||    
T  22811029 ttctttgggggtgagtagtgacgatggatggt--aggatatcgtttttacagtggtcggtttcgtgaagcagtctgttttaggaggtga 22810943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 48098546 - 48098632
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||| ||||||||||||||||| |||| || ||| ||||||||||| ||||||||||||  ||||  |||  |||||||||||||||    
T  48098546 ttctttgggggtgagtagtgacgacgggttgtgatggatatcgtttttacagtggtcgtttttgtga--aagagtgttttaggtggtga 48098632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 49747739 - 49747826
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||| ||||||||||||||| ||||| |||  || || |||||||| || ||||||||| ||||||  |||||||||||||||||||    
T  49747739 ttctttaggggtgagtagtgacaatgggcggtgttggat-tcgtttttacaatggtcgttttcgtgaaagagtctgttttaggtggtga 49747826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 38637095 - 38637016
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||||||||||||||||||||||  || ||||| ||||| ||| ||| |||| ||||||  ||| |||||||||||||||    
T  38637095 ggggtgagtagtgacgatgggtggt--tggatatcatttttacagcggttgttttcgtgaaggagtttgttttaggtggtga 38637016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 49528163 - 49528249
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||| ||||||||| | |||||||||  ||  ||||||| ||||| |||  || ||| ||||||||||||| ||||||||    
T  49528163 ttctttcggtggatcggaggtcgggaggtggtggaagatgaatgatctttcggatagaagctttgcggatgtggttcagctttggtg 49528249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 46487477 - 46487522
Alignment:
Q  160 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcg 205  Q
    ||||||||| ||||  ||||||||| ||||||||||||||||||||    
T  46487477 tgagtagtggcgatatgtggttatgaatatcgtttttcagtggtcg 46487522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 20632339 - 20632268
Alignment:
Q  164 tagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    ||||| ||| |||||||||||| ||||||| ||||||||| ||||  |||||  ||||||||||||| |||||    
T  20632339 tagtggcgacgggtggttatgtgtatcgttcttcagtggttgttt-tgtgaaagagtctgttttagggggtga 20632268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 174
Target Start/End: Complemental strand, 39021267 - 39021122
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatattt-cgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgag 129  Q
    |||||| |||| ||||||||| ||||| ||||| |||| || |||| ||| || ||||||| ||||||||||||| | | |||||||| ||||||  |||    
T  39021267 ttcttttggtggatcggaggtcgagagatggtggtagctgattgatcttttcggatatgagtttttcggatgtggcttagctttggtgttgaggactgag 39021168  T
Q  130 aatttcatttaga-gcggtcttctttcggggtgagtagtgacgatg 174  Q
    | |||||||| || |||   |||||| || ||||||||||||||||    
T  39021167 agtttcattttgacgcgtgtttctttgggtgtgagtagtgacgatg 39021122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 823450 - 823246
Alignment:
Q  5 agtttggtgttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtgg 104  Q
    ||||| || ||||| ||||||| |||||||||||||  | | ||||||||||||||| |  ||| ||||||| |||  |||| ||  ||||| |||||||    
T  823450 agttttgttttgggcttattttggtgttctttcggtagaccagaggttgagaggtggcggaagctgaatgatcttttcaataggacattttcagatgtgg 823351  T
Q  105 ttcaactttggtgatgaggatcgagaatttcatttagagcggtctt-ctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggt 203  Q
     |||| | |||| || ||||    |  ||| | |||||| ||| || ||||  |||||||||| | ||| ||||||||||| ||||||||||||||||||    
T  823350 ctcaattatggtaataaggacatggtgtttgaattagagaggtgtttcttttagggtgagtagaggcgaagggtggttatggatatcgtttttcagtggt 823251  T
Q  204 cgttt 208  Q
     ||||    
T  823250 tgttt 823246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 14879648 - 14879708
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgttt 208  Q
    |||||||||||||| ||||||||||| |||||  || |||||| |||||||||||||||||    
T  14879648 ttctttcggggtgaatagtgacgatgtgtggtgttggatatcgttttttcagtggtcgttt 14879708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 25647777 - 25647863
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    |||||| |||| ||||||||| |||||||||||| ||  ||||||| |||||  |||||| |||||||| |||| |||  |||||||    
T  25647777 ttcttttggtggatcggaggtcgagaggtggtgaaagttgaatgatctttcggttatgagcttttcggacgtggctcagttttggtg 25647863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 14194152 - 14194229
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||||||||||||||||| ||||  || |||||||| |||||||| || || |||||   |||||||||||||||||||    
T  14194152 ggggtgagtagtgacgatggatggt--tggatatcgttattcagtgg-cgatttcgtgatggagtctgttttaggtggtga 14194229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 23328233 - 23328188
Alignment:
Q  136 atttagagcggtcttctttcggggtgagtagtgacgatgggtggtt 181  Q
    |||| ||| ||| |||||| ||||||||||||||||||||||||||    
T  23328233 attttgagtggtgttctttgggggtgagtagtgacgatgggtggtt 23328188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 28937574 - 28937498
Alignment:
Q  158 ggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtgg 233  Q
    ||||||||||| |||||||||||  || ||||||||||| ||||||||  || ||||||   |||||||||||||||    
T  28937574 ggtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcactttcgtgaaggggtctgttttaggtgg 28937498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 32010016 - 32010060
Alignment:
Q  192 tttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||||| |||||||| ||||||  |||||||||||||||||||    
T  32010016 tttttcagaggtcgttttcgtgaaggagtctgttttaggtggtga 32010060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 33143813 - 33143733
Alignment:
Q  157 gggtgagtagtgacgatgggtggttatgtatatcgttt-ttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||||||||||||| || |||   || ||||||||| ||||||||| |||| ||||||  ||| |||||||||||||||    
T  33143813 gggtgagtagtgacgacggatggggttggatatcgtttgttcagtggtggttttcgtgaaggagtttgttttaggtggtga 33143733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 892 - 817
Alignment:
Q  160 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    ||||||||||||||| ||||||||| |||||||||| ||||| ||  || ||||||  |||||||||||||||||||    
T  892 tgagtagtgacgatgagtggttatggatatcgttttccagtgatc-attccgtgaaagagtctgttttaggtggtga 817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 10248430 - 10248349
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    ||||||||||||||||||||||| |   | || |||||||| |||||||||||| ||||||  ||| |||||||||||||||    
T  10248430 ggggtgagtagtgacgatgggtgttgtgggatgtcgtttttacagtggtcgttttcgtgaaggagtttgttttaggtggtga 10248349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 17720626 - 17720545
Alignment:
Q  115 gtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 196  Q
    ||||||||||  |||  |||||||||||| ||| |  ||| ||||||||||||||||||  ||||||||||||||| |||||    
T  17720626 gtgatgaggacggagtgtttcatttagaggggtttatttttggggtgagtagtgacgatatgtggttatgtatatctttttt 17720545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 17656992 - 17656906
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||| ||||||||| || ||||||||  ||| ||||||| ||||  ||| ||| ||||| || |||| ||||||||||||    
T  17656992 ttctttcggtggatcggaggtcgataggtggtggaagctgaatgatctttcatataggagcttttcagaggtggctcaactttggtg 17656906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 12197945 - 12197857
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgt-ttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||| ||||||||||||||||| |||||||  || ||||||| |||| ||||||||| | | ||||   ||||||| ||||||||||    
T  12197945 ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtga 12197857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 12442373 - 12442285
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgt-ttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||| ||||||||||||||||| |||||||  || ||||||| |||| ||||||||| | | ||||   ||||||| ||||||||||    
T  12442373 ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtga 12442285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 58218 - 58427
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgaga 130  Q
    ||||||||||| ||||||||| ||||| || ||  ||| |||| || ||||| ||| ||| |||||| |||||| ||| |||||||| |  |||  ||||    
T  58218 ttctttcggtggatcggaggtcgagagatgatggaagctgaattatctttcggataagagcttttcgaatgtggctcagctttggtgttcgggactgaga 58317  T
Q  131 atttcatttagagcggtctt---ctttcggggtgagtagtgacgatgggtggttatgtatatc-gtttttcagtggtcgtttacgtgaataagtctgttt 226  Q
     ||| |||| |||  || ||   |||| || |||||||||||||| |||| ||  || ||||| ||||| || ||||||||| ||||||  |||||||||    
T  58318 gtttaattttgaggagtgttgttctttgggtgtgagtagtgacgacgggtagtgttggatatcagttttacaatggtcgttttcgtgaaggagtctgttt 58417  T
Q  227 taggtggtga 236  Q
    | ||||||||    
T  58418 ttggtggtga 58427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 36920 - 37005
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||| |||||||||||||||| ||| ||||  || || |||||||| ||||||| |||| ||||||  |||||||||||||||||||    
T  36920 ttctttgggggtgagtagtgacggtggatggt--tggatgtcgtttttacagtggtggttt-cgtgaaggagtctgttttaggtggtga 37005  T

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