View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_306 (Length: 236)
Name: NF8912A_low_306
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_306 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 53984798 - 53985024
Alignment:
| Q |
4 |
actgaaatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaag |
103 |
Q |
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| T |
53984798 |
actgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaag |
53984897 |
T |
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| Q |
104 |
acgtgtgtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggacta |
203 |
Q |
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| T |
53984898 |
acgtgtgtagaggtagatttaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggacta |
53984997 |
T |
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| Q |
204 |
tgttgaagcacgtctagcatccacttc |
230 |
Q |
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| T |
53984998 |
tgttgaagcacgtctagcatccacttc |
53985024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 53971094 - 53971315
Alignment:
| Q |
5 |
ctgaaatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaaga |
104 |
Q |
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| T |
53971094 |
ctgagatgaaatacatgtcggaacattttgtgggtcctgccaattgtcctcataaattccatcctccatctcctacaataagacggagggggtagtaaga |
53971193 |
T |
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| Q |
105 |
cgtgtgtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcata-tcttaaacctgatgaatggtaagatgttgaagtttgggacta |
203 |
Q |
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| T |
53971194 |
catgt--agaggtatatttaccaaattaaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggacta |
53971291 |
T |
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| Q |
204 |
tgttgaagcacgtctagcatccac |
227 |
Q |
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| T |
53971292 |
tgttagagcacgtctagcatccac |
53971315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 53071964 - 53071908
Alignment:
| Q |
166 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagca |
222 |
Q |
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| T |
53071964 |
aaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagca |
53071908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 34036358 - 34036297
Alignment:
| Q |
166 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccac |
227 |
Q |
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| T |
34036358 |
aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctagcatccac |
34036297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 6688157 - 6688093
Alignment:
| Q |
166 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttc |
230 |
Q |
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| T |
6688157 |
aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctaccatccacttc |
6688093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 16163998 - 16164058
Alignment:
| Q |
167 |
aacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccac |
227 |
Q |
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| T |
16163998 |
aacctgatgaatggcaagatgttcaagcttgggcctctgttgaagcacttctagcatccac |
16164058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 19935421 - 19935380
Alignment:
| Q |
166 |
aaacctgatgaatggtaagatgttgaagtttgggactatgtt |
207 |
Q |
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| T |
19935421 |
aaacctgatgaatggtaagattttgaagtttgggacaatgtt |
19935380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 19966560 - 19966519
Alignment:
| Q |
166 |
aaacctgatgaatggtaagatgttgaagtttgggactatgtt |
207 |
Q |
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| T |
19966560 |
aaacctgatgaatggtaagattttgaagtttgggacaatgtt |
19966519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 31014529 - 31014482
Alignment:
| Q |
166 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagca |
213 |
Q |
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|||||| ||||||| ||||||||||||| |||||||| |||||||||| |
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| T |
31014529 |
aaaccttatgaatgataagatgttgaagcttgggactgtgttgaagca |
31014482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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