View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_31 (Length: 415)
Name: NF8912A_low_31
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 468982 - 469362
Alignment:
| Q |
16 |
gcaatcattaagagtgttaagaagttaagaacactcaatttaacactctttttccaacactcactcttttattgacgtgggtcccacaattataaaaatt |
115 |
Q |
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| T |
468982 |
gcaaacattaggagtgttaagaagttaagaacactcaatttaacactctttttccaacactcactcttttattgacatgggtcccacaattataaaaatt |
469081 |
T |
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| Q |
116 |
tgtctcacataacatggtaggacctatatgatatgatttcactcaataatagagtgagtgtcaaaaagagtgttaaagagatcgttcctatgattctatg |
215 |
Q |
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| T |
469082 |
tgtctcacataacatggtaggacctatatgatatgatttcactcaataatagagtgagtgtcaaaaagagtgttaaagtgattgttcctatgatcctatg |
469181 |
T |
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| Q |
216 |
tcattactctatgatacatttgattgattaaatgctaaagcattctacgaagggtgaatggataaagttgttagctnnnnnnnnnnnnnnnnnnnnnnnn |
315 |
Q |
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| T |
469182 |
tcattactctatgatacatttgattgattagatgctaaagcattctacgaagggtgaatggataaagttgttagctaaaattcaaaataaaatcaaaaaa |
469281 |
T |
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| Q |
316 |
tggtcatatgatatgtagtattgagacttcatattgaagacatgtctcatacatgccatatgatatgtgacgcatatgatt |
396 |
Q |
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| T |
469282 |
tgttcatatgatatgtagtattgagacttcatattgaagacatgtctcatacatgccatatgatatgtgacacatatgatt |
469362 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 15508978 - 15508938
Alignment:
| Q |
149 |
tgatttcactcaataatagagtgagtgtcaaaaagagtgtt |
189 |
Q |
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| T |
15508978 |
tgatttcactcaataaaagagtgagtgttagaaagagtgtt |
15508938 |
T |
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