View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_311 (Length: 235)
Name: NF8912A_low_311
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_311 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 10312984 - 10313211
Alignment:
| Q |
9 |
agatgaactgtatttgtaacaagtgagtgagtgtgt-aggtttatatatttgggtttaacacacaacggtattataagggtacttgcttggaaacaacgg |
107 |
Q |
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| T |
10312984 |
agatgaactgtatttgtaacaagtgagtgagtgagttaggtttatatatttgggtttaacactcaacggtattataagggtacttgcttggaaacaacgg |
10313083 |
T |
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| Q |
108 |
cacttaagtattttttcttctgcatatgaaatccaaacccaaccctatttgttttatgggaataaccatgtagtgcttcataagattcttttgagaggaa |
207 |
Q |
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| T |
10313084 |
cacttaagtattttcccgtttgcatatgaaatccaaacccaaccctatttgttttatgggaataaccttgtagtgcttcataagattcttttgagaggaa |
10313183 |
T |
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| Q |
208 |
taaaattgtatcatttcattctttaaaa |
235 |
Q |
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| T |
10313184 |
taaaattgtatcatttcattatttaaaa |
10313211 |
T |
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