View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_314 (Length: 234)
Name: NF8912A_low_314
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_314 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 1124256 - 1124032
Alignment:
| Q |
10 |
atgcaatggcagctacattatatgtgaaaatctgaaatacttaatgactttcataattttcaaccaaatcatataagtaaattcctgatatacaaccctg |
109 |
Q |
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| T |
1124256 |
atgcaatggcagctacattatatgtgaaaatctgaaatacttaatgactttcataattttcaaccaaatcatataagtaaattcctgatatacaaccctg |
1124157 |
T |
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| Q |
110 |
gtgtagtctagcgtagaaaaacctagccggtggtcataaggaaaggtaattaataattataaacgcattaggaaaacaaaagtcacatgcacctggattc |
209 |
Q |
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| T |
1124156 |
gtgtagtctagtgtagaaaaacctagccggtggtcataaggaaaggtaattaataattataaacgcattaggaaaacaaaagtcacatgcacctggattc |
1124057 |
T |
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| Q |
210 |
caagtattttatcattatttgccag |
234 |
Q |
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||||||||||||||||||||||||| |
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| T |
1124056 |
caagtattttatcattatttgccag |
1124032 |
T |
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