View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_315 (Length: 234)
Name: NF8912A_low_315
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_315 |
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| [»] scaffold1079 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 18347978 - 18347747
Alignment:
| Q |
1 |
tttggtgttaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagaccgcattacaaacgtatga |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347978 |
tttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagaccgcattacaaacgtatga |
18347879 |
T |
|
| Q |
101 |
tcattacgcttcaaccgggttattctattccacctcttagaaaagaacttaactaaaaatacacttaatagcatggcgatacatttatacaaaacttcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347878 |
tcattacgcttcaaccgggttattctattctacctcttagaaaagaacttaaataaaaatacacttaatagcatggcgatacatttatacaaaacttcta |
18347779 |
T |
|
| Q |
201 |
tcccgagcacccgcacacgaaatcgtttgatt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
18347778 |
tcccgagcacccgcacacgaaatcgtttgatt |
18347747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 16899463 - 16899232
Alignment:
| Q |
1 |
tttggtgttaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagaccgcattacaaacgtatga |
100 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16899463 |
tttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaatggtagaagaatgcgacctattatgggacatagaccgcattacaaacgtatga |
16899364 |
T |
|
| Q |
101 |
tcattacgcttcaaccgggttattctattccacctcttagaaaagaacttaactaaaaatacacttaatagcatggcgatacatttatacaaaacttcta |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16899363 |
tcattacgcttcaaccgggttattctattctacctcttagaaaagaacttaaataaaaatacacttaatagcatggcgatacatttatacaaaacttcta |
16899264 |
T |
|
| Q |
201 |
tcccgagcacccgcacacgaaatcgtttgatt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
16899263 |
tcccgagcacccgcacacgaaatcgtttgatt |
16899232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 13236513 - 13236744
Alignment:
| Q |
1 |
tttggtgttaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagaccgcattacaaacgtatga |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13236513 |
tttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagaccgcattacaaacgtatga |
13236612 |
T |
|
| Q |
101 |
tcattacgcttcaaccgggttattctattccacctcttagaaaagaacttaactaaaaatacacttaatagcatggcgatacatttatacaaaacttcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13236613 |
tcattacgcttcaaccgggttattctattctacctcttagaaaagaacttaaataaaaatacacttaatagcatggcgatacatttatacaaaacttcta |
13236712 |
T |
|
| Q |
201 |
tcccgagcacccgcacacgaaatcgtttgatt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
13236713 |
tcccgagcacccgcacacgaaatcgtttgatt |
13236744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 470 - 254
Alignment:
| Q |
1 |
tttggtgttaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagaccgcattacaaacgtatga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||||| ||||||| |
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| T |
470 |
tttggtgtcaaggtaatagctatgaatagtcatcgactcccccgaaagggtagaagaatgggacctattatgggacatacaatgcattacaggcgtatga |
371 |
T |
|
| Q |
101 |
tcattacgcttcaaccgggttattctattccacctctta----gaaaagaacttaactaaaaatacacttaatagcatggcgatacatttatacaaaact |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| |
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| T |
370 |
tcattacgcttcaaccgggttattctattccacctcttacaacgaaaagaacttaaatcaaaat--acttaatagcatggcgatacatttatacaaaact |
273 |
T |
|
| Q |
197 |
tctatcccgagcacccgca |
215 |
Q |
| |
|
|||| |||| |||| |||| |
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| T |
272 |
tctaccccgggcacacgca |
254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 197996 - 198128
Alignment:
| Q |
1 |
tttggtgttaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagaccgcattacaaacgtatga |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||||| || ||| ||||||||||| |||||||| |||| |||| | |||||||| |||||||| |
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| T |
197996 |
tttggtgttaaggtggtagctgtgaatagccatcgactacctggaaaaggtagaagaataggacctattctgggccatacaatgcattacagacgtatga |
198095 |
T |
|
| Q |
101 |
tcattacgcttcaaccgggttattctattccac |
133 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
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| T |
198096 |
tcattacccttcaaccgggttattctattccac |
198128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 256437 - 256562
Alignment:
| Q |
8 |
ttaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaatgcgacctattatgggacatagaccgcattacaaacgtatgatcattac |
107 |
Q |
| |
|
||||||| ||||| ||||||| |||||||| || ||| ||||||||||| |||||||| |||| | || | |||||||| ||||||||||||||| |
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| T |
256437 |
ttaaggtggtagctgtgaatagccatcgactacctggaaaaggtagaagaataggacctattctgggccgtacaatgcattacagacgtatgatcattac |
256536 |
T |
|
| Q |
108 |
gcttcaaccgggttattctattccac |
133 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
256537 |
ccttcaaccgggttattctattccac |
256562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10404018 - 10403965
Alignment:
| Q |
1 |
tttggtgttaaggtaatagctatgaatagtcatcgactcccaataaagggtaga |
54 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10404018 |
tttggtgtcaaggtaatagctatgaatagtcatcgactcccaataaagggtaga |
10403965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 42203424 - 42203482
Alignment:
| Q |
1 |
tttggtgttaaggtaatagctatgaatagtcatcgactcccaataaagggtagaagaat |
59 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
42203424 |
tttgatgtcaaggtaatagctatgaatagtcatcgactcccaataaaggataaaagaat |
42203482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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