View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_32 (Length: 413)
Name: NF8912A_low_32
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 147 - 407
Target Start/End: Original strand, 5822841 - 5823095
Alignment:
| Q |
147 |
attttatcaaataacatttcttaatttggatgaaat-----aggtacgtgcctaatttggacaagggtaaggcacttcacttccttttcatcaaagcaga |
241 |
Q |
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| T |
5822841 |
attttatcaactaacatttcttaatttggttgaattgaattaggtatgtgcctaatttggacaagggtaaggcacttcacttccttttcatcaaagcaga |
5822940 |
T |
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| Q |
242 |
aacaaaaactccaagtggattagtggcacgtccagttaccacagccatctacaaaagtgaacaattcatgaaaagaccatttggcccttacaatgttcta |
341 |
Q |
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| T |
5822941 |
aacaaaaactccaagtggattagtggcacgtccagttatcaaagc----------aga-aacaattcatgaaaagaccatttgacccttacaatgttcta |
5823029 |
T |
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| Q |
342 |
acaagcccaaatgaagccatctcatgtttagattcattccaaagcatgtacactcagatgctatgt |
407 |
Q |
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| T |
5823030 |
acaagcccaaatgaagccatctcatgtttagattcattccaaagcatgtacactcagatgctatgt |
5823095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 196 - 403
Target Start/End: Complemental strand, 5833182 - 5832975
Alignment:
| Q |
196 |
atttggacaagggtaaggcacttcacttccttttcatcaaagcagaaacaaaaactccaagtggattagtggcacgtccagttaccacagccatctacaa |
295 |
Q |
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| T |
5833182 |
atttggacaaaggaaaagcacttcactttcttttcatcaaagcagaaacaaaaactccaagtgggttagtggcacgtccagttctaacagcctactacaa |
5833083 |
T |
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| Q |
296 |
aagtgaacaattcatgaaaagaccatttggcccttacaatgttctaacaagcccaaatgaagccatctcatgtttagattcattccaaagcatgtacact |
395 |
Q |
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| T |
5833082 |
aagtgaacagtttaagaaaagaccatttgacccttacaatgtgttaacaagtccagatgaagctatcctttgtcctgattcatttcaaagcatgtatact |
5832983 |
T |
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| Q |
396 |
cagatgct |
403 |
Q |
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| T |
5832982 |
cagatgct |
5832975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 16256678 - 16256614
Alignment:
| Q |
18 |
aataatcaaattaggaggagttataaaattgaattgcatccaattcatcacctccatccaaactt |
82 |
Q |
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| T |
16256678 |
aataatcaaatcaggaggagtaataaaattgaattgtatccaattcatcacctccctctaaactt |
16256614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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