View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_324 (Length: 230)
Name: NF8912A_low_324
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_324 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 25617223 - 25616994
Alignment:
| Q |
1 |
tcagaattatatatgnnnnnnntaataaaattatttttaaaattgaaactgtttaatttagtaatgaatgcatctatagagctagaggtttgatttacat |
100 |
Q |
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| T |
25617223 |
tcagaattatatatgaaaaaaataataaaattacttttaaaattgaaaccgtttaatttagtaatgaatgcatctatagagctagaggtttgatttacat |
25617124 |
T |
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| Q |
101 |
cattccaaagtacatatagagctaatacactttattttacaggttaatattaaaaggagaattcttttagctgtgcatctgaatcttatagacaaaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25617123 |
cattccaaagtacatatagagctaatacactttattttacaggttaatattaaaaggagaattcttttagctgtgcatctgaatcttatagacaaaattt |
25617024 |
T |
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| Q |
201 |
agactcacctccaacatgggagctaaatag |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
25617023 |
agactcacctccaacatgggagctaaatag |
25616994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 25611595 - 25611738
Alignment:
| Q |
23 |
taataaaattatttttaaaattgaaactgtttaatttagtaatgaatgcatctatagagctagaggtttgatttacatcattccaaagtacatatagagc |
122 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25611595 |
taataaaattacttttaaaattgaaactgtttaatttagtaatgaatgcatctatagagctagaggtttgatttacatcattccaaagtacatatagagc |
25611694 |
T |
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| Q |
123 |
taatacactttattttacaggt-taatattaaaaggagaattct |
165 |
Q |
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| T |
25611695 |
taatacactttattctacaggtaaaatattaaaaggagaattct |
25611738 |
T |
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