View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8912A_low_328 (Length: 230)
Name: NF8912A_low_328
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_328 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 52423715 - 52423938
Alignment:
| Q |
1 |
tgttggtcatcttgtttccgtgctgagtattaactcttatttgagtaagttgcaagagattgatcctttgtttgattggactttttagcattctccaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52423715 |
tgttggtcatcttgtttccgtgctgagtattaactcttatttgagtaagttgcaagagattgatcctttgtttgattggactttttagcattctccaagt |
52423814 |
T |
|
| Q |
101 |
ttctattgattaggattttgcctcattgtgaactaattagcttgttccaattttggtttgttttggtctgttatggtttcagcttagtttctagtatggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52423815 |
ttctattgattaggattttgcctcattgtgaactaattagcttgttccaattttggtttgttttggtctgttatggtttcagcttagtttctagtatggg |
52423914 |
T |
|
| Q |
201 |
cagcttggtctctttagtcatcaa |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
52423915 |
cagcttggtctctttagtcatcaa |
52423938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University