View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8912A_low_329 (Length: 230)
Name: NF8912A_low_329
Description: NF8912A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8912A_low_329 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 29524591 - 29524818
Alignment:
| Q |
3 |
ccaacgcattgtgaagactagttggccttgtgtcaagtgtagtaggcctattatgttatgctcagagcctttctttcaatcgtttaattggaaaatggaa |
102 |
Q |
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| T |
29524591 |
ccaacgtaatgtggagaatagttggaattgtgtcaagtgtagtaggcctattatgtaatgctcagagccattctttcaatcgtttcattggaaaatggaa |
29524690 |
T |
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| Q |
103 |
cattctaaagttctttttgtattgggtgctttccttggttatctttactaccatgttgtttgtaaagcagttcttaccatccacacgatatggtcatata |
202 |
Q |
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| T |
29524691 |
cactctcaagttctttctgtatggggtgttttccttggttatctttactaccatgttgtttgtaaagccgttctcaacatccacacgatatggtcatata |
29524790 |
T |
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| Q |
203 |
aaaatctacacgagctttgcagttttga |
230 |
Q |
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| T |
29524791 |
aaaccctacacgggcttcacagttttga |
29524818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 29612381 - 29612607
Alignment:
| Q |
4 |
caacgcattgtgaagactagttggccttgtgtcaagtgtagtaggcctattatgttatgctcagagcctttctttcaatcgtttaattggaaaatggaac |
103 |
Q |
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| T |
29612381 |
caacgcattttggagactagttggccttgtgtcaagtgtatttggcctattgtgttatgctcagagcccttctttcaatcgtttaattggaagatggaac |
29612480 |
T |
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| Q |
104 |
attctaaagttctttttgtattgggtgctttccttggttatctttactaccatgttgtttgtaaagcagttcttaccatccacacgatatggtcatataa |
203 |
Q |
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| T |
29612481 |
attgtcaagttctctctgtatggagtgttttccttggctatctttaccaccatattgtttgtaaagcagttctcaccatccacaaaatatgctcaactaa |
29612580 |
T |
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| Q |
204 |
aaatctacacgagctttgcagttttga |
230 |
Q |
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| T |
29612581 |
aaacttacataagctttgcagttttga |
29612607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 29529070 - 29528996
Alignment:
| Q |
21 |
tagttggccttgtgtcaagtgtagtaggcctattatgttatgctcagagcctttctttcaatcgtttaattggaa |
95 |
Q |
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| T |
29529070 |
tagttgggcttatgtcaagtgtagttggcctgttatgttatgctctgagcccttctttcaatcgattaattggaa |
29528996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 29475394 - 29475317
Alignment:
| Q |
21 |
tagttggccttgtgtcaagtgtagtaggcctattatgttatgctcagagcctttctttcaatcgtttaattggaaaat |
98 |
Q |
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| T |
29475394 |
tagttggccttatgtcaagtatagtcggtctggtttgttatgctctgagcccttctttcaatcgattaattggaaaat |
29475317 |
T |
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